Developing Mouse Brain Atlas

Developmental cell types and states (clusters)

Location data is inferred from spatial mapping of clusters to the E10.5 embryo and is given only for clusters where >50% of cells were from E9, E10 or E11.

The table corresponds to the revised clustering in the final paper, not the preprint. Clusters are ordered according to the dendrogram of Figure 1.

Symbol	Index	Class	Subclass	Likely location	Cells	Markers	Comment
ParEndo	0	Gastrulation	Parietal endoderm		11	Srgn Dppa5a Gata4 Pth1r Tinagl1 Fxyd3	Expresses Srgn, Pdgfra, Lama1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
	1	Gastrulation	Undefined		26	Rhox5 Zbtb7b Trap1a Apoc1 Zfp42 AC158554.1	High doublet score; extraembryonic endoderm and ectoderm
TrophEct	2	Gastrulation	Extraembryonic ectoderm		438	Tex19.1 Elf5 Gjb3 Dppa4 Zfp42 AC158554.1	Expresses Elf; See trophoblast auto-annotation
FGut4	3	Gastrulation	Endoderm		49	Apela Habp2 Hhex Car4 Dpp4 Rfx6	See auto-annotation
FGut1	4	Gastrulation	Endoderm		78	Apela Apoa1 Gpx2 Krt18 Cpn1 Pcbd1	See auto-annotation
FGut3	5	Gastrulation	Endoderm		63	Apela Plscr1 Hhex Krt18 Foxa3 Tnnc1	See auto-annotation
FGut2	6	Gastrulation	Endoderm		22	Pyy Nme2 Krt8 Krt18 Cpn1 Kdf1	See auto-annotation
VEnd1	7	Gastrulation	Endoderm		247	Spink1 Eprn Trap1a Xlr3a Vil1 Fmr1nb	See auto-annotation
VEnd3	8	Gastrulation	Visceral endoderm		98	Pga5 Arid3c Cdkn2a Akr1c13 Pla2g12b Nxf7	Expresses Cer1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
VEnd2	9	Gastrulation	Visceral endoderm		303	Pga5 Fgfbp1 Cdkn2a Slc39a4 Amn Ctsh	Expresses Cer1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
ExVE5	10	Gastrulation	Extraembryonic endoderm		127	S100g Tslrn1 Apoa2 Rbp4 Fxyd2 2210011C24Rik	Cubn (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
ExVE4	11	Gastrulation	Extraembryonic endoderm		613	Cubn Ank Apoa2 Apob Amn Smlr1	Cubn (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
ExVE3	12	Gastrulation	Extraembryonic endoderm		120	Spink1 Gcgr Afp Apob Amn Slc39a5	Cubn (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
ExVE2	13	Gastrulation	Extraembryonic endoderm		901	Apom Plbd1 Apoa4 Rbp4 2610528J11Rik Tdh	See auto-annotation
ExVE1	14	Gastrulation	Extraembryonic endoderm		645	Aldob Pnpo Lgals2 Car7 4933402E13Rik Tdh	See auto-annotation
CardCres	15	Gastrulation	Cardiac mesoderm		300	Actc1 Myl4 Tnnt2 Myl3 Ankrd1 Ttn	Expresses Nkx2-5; see auto-annotation
MesPer	16	Gastrulation	Osteochondral mesoderm		294	Hand1 Smoc2 Plac8 Pmp22 Cryab Ahnak	See auto-annotation
MesOst	17	Gastrulation	Undefined		85	Tdo2 Tnni1 Plac8 Krt18 Cryab Aard	Low UMI; no markers on heatmap
Mesod4	18	Gastrulation	Mesoderm		635	Mesp1 Mesp2 Gata4 Id2 Dusp9 Agtrap	Expresses Lefty2
Mesod3	19	Gastrulation	Mesoderm		352	Adrb3 Myl7 Ifitm1 Cyp26a1 Dusp9 Myl1	Expresses Lefty2 and Alx1 enriched
Mesod5	20	Gastrulation	Mesoderm		421	Phlda2 Slc22a18 Cfc1 Vrtn Msx2 Amhr2	See auto-annotation
Mesod6	21	Gastrulation	Hematoendothelial lineage		45	Etv2 Cd40 Cfc1 Mixl1 Kdr Klhl6	Tal1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
CardCr	22	Gastrulation	Mesenchyme		443	Hand1 Hoxd1 Spin2c Plac1 Bmp4 Morc4	Msx2, Plac1, Unc5c (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Mesn1	23	Gastrulation	Undefined		317	Hand1 Pard6b Car14 Krt18 Msx2 Smtnl2	Low UMI; no markers on heatmap
HemEndPr1	24	Gastrulation	Hematoendothelial lineage		139	Etv2 Tom1l1 Tmem88 Lmo2 Myc Smtnl2	Expresses Tal1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
HemEndPr2	25	Gastrulation	Hematoendothelial lineage		32	Etv2 Btbd10 Bmp2 Lmo2 Kdr Abi3	Expresses Tal1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
HematProg	26	Gastrulation	Hematoendothelial lineage		70	Fgf3 Hapln1 Hhex Skap1 Runx1 Fli1	Expresses Tal1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Mesod2	27	Gastrulation	Nascent mesoderm		1049	Lefty2 Rhbg Tdgf1 Cyp26a1 Frzb Gna14	Expresses Lefty2 and T (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Mesod1	28	Gastrulation	Nascent mesoderm		414	T Wnt8a Hoxb1 Hes7 Psors1c2 Tcea3	Enriched in T (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
GermC	29	Gastrulation	Primordial germ cells		36	Cdx2 Psmb8 Dnd1 Hes7 Ifitm3 Tdrd5	Expresses Tfap2c, Fgf8, Bmp4, Cdx2, T (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Epi1	30	Gastrulation	Epiblast		3209	Utf1 Slc7a3 Dnmt3b L1td1 Rbpms2 Pou5f1	See PSC auto-annotation
Epi2	31	Gastrulation	Epiblast		992	Utf1 Gm14399 Pim2 Cdh1 Epha1 Pou5f1	See PSC auto-annotation, it has low levels of T and Eomes
Epi3	32	Gastrulation	Undefined		671	T Tbx6 Apln Mixl1 Psors1c2 Tcea3	Low UMI; no markers on heatmap
DVE1	33	Gastrulation	Definitive endoderm		247	Trh Sfn Tmprss2 Elf3 Crb3 Nlrp4e	See auto-annotaton; Trh and Hesx1 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
DVE2	34	Gastrulation	Definitive endoderm		421	Cer1 Ermn Sox17 Ap1s3 Ovol2 Slc16a1	Trh and Hesx2
DVE3	35	Gastrulation	Anterior primitive streak		190	Cer1 Gsc Upp1 Fgf5 Chrd Pkd1l1	Cer1, Lhx1, Gsc, Mixl1
AEMeso	36	Gastrulation	Node		230	Noto Dnajb13 Foxj1 Pifo Chrd 1700028P14Rik	Noto, Foxj1
	37	Gastrulation	Undefined		10	Krt19 9530036O11Rik Car3 Rab38 Tgm2 Usp18	Doublets? T, Lmx1a, Noto, Krt19, Shh, Epcam
ChorProg	38	Radial glia	Early choroid plexus	Tela choroidea of fourth ventricle	43	Gmnc A930003A15Rik Ccno Cela1 Actn3 Anxa3	Foxj1, Trp73; Mafb, Otx2, Msx1, Msx2, Wnt1, Lmx1a
RglHB1	39	Radial glia	Fourth-ventricle roof plate	Fourth ventricle roof plate	338	Rspo1 Gm48898 Wnt3a Msx1 Msx2 Cx3cl1	Mafb (DOI: 10.1016/j.bbrc.2016.12.150), Otx2, Msx1, Msx2, Wnt1, Lmx1a
Mesn2	40	Mesenchyme	Mesenchyme	Failed spatial mapping	1251	Lum Cpa2 Fabp7 Pcolce Cnn2 Tmem119	See @Msn auto-annotation
Mesn3	41	Mesenchyme	Mesenchyme	External connective tissue of the head	1719	Twist2 Adamts6 Col3a1 Colec12 Parm1 Mkx	See @Msn auto-annotation
Mesn4	42	Mesenchyme	Mesenchyme	Very sparse, outside of nervous system	840	Twist2 Vrk2 Col9a1 Col26a1 Snai1 Crispld1	See @Msn auto-annotation
Mesn5	43	Mesenchyme	Mesenchyme	Internal connective tissue	1316	Tbx1 Gm5127 Col9a1 Pcolce Tbx18 Tmem119	See @Msn auto-annotation
Mesn6	44	Mesenchyme	Mesenchyme	Mandibular component of first branchial arch	852	Barx1 Stk26 Prrx2 Ppfibp2 Col23a1 Fli1	See @Msn auto-annotation and Lhx8 suggests oral mesenchyme (doi: 10.1096/fj.14-267500)
Mesn7	45	Mesenchyme	Mesenchyme	Maxillary component of first branchial arch	999	Prrx1 Taf5 Prrx2 Serpinf1 Col23a1 Fli1	See @Msn auto-annotation
Mesn8	46	Mesenchyme	Mesenchyme	Lateral nasal process/placode	865	Alx3 Car12 Alx4 D030045P18Rik Itga8 Mdfi	See @Msn auto-annotation
Mesn9	47	Mesenchyme	Mesenchyme	Medial nasal process/placode	559	Alx1 Eepd1 Dpep1 Tnfaip6 Hmcn1 Tmem119	See @Msn auto-annotation
	48	Mesenchyme	Undefined	Failed spatial mapping	307	Alx1 Dhx32 Ptx3 Pcolce Cnn2 Oaf	No markers on heatmap
	49	Mesenchyme	Undefined	Internal connective tissue	72	Cped1 Scube3 Ddr2 Eya1 Snai1 Ror1	Doublets? High doublet score
	50	Mesenchyme	Undefined	Failed spatial mapping	29	Twist2 Six4 Twist1 Serpinf1 Col23a1 Sycp2l	Doublets? High doublet score
NEpit1	51	Neural tube	Floor plate		59	9030622O22Rik Sema3e Foxd4 Car4 Igfbp5 Trabd2b	Nkx2-9 (https://doi.org/10.1016/S0925-4773(98)00035-5); Shh, Foxa1, Foxa2, Nkx2-2
NEpit4	52	Neural tube	Undefined		162	Meox1 Mir17hg Hotairm1 Prtg Trim71 Fignl2	Relatively high doublet score; early neural tube and paraxial mesoderm annotation
NEpit3	53	Neural tube	Caudal		1668	Hes3 Gm6563 Lin28a Prtg Hmga1 Akr1b3	Hotairm1, Hoxa2, Pax5, Pax8
NEpit2	54	Neural tube	Anterior		771	Hesx1 Irs4 Eras Wfdc2 Lrp2 Klk8	See ANE auto-annotation
	55	Neural tube	Optic cup	Optic cup	865	Six6 Vax2 A730049H05Rik Trpm1 Hmx1 Mitf	See auto-annotation
NMP	56	Neural tube	Neuromesodermal progenitors		372	Hoxaas3 Cdx4 Cdx1 Hoxb9 Hoxa7 Hoxa9	T and Cdx genes
MesnPhar1	57	Mesoderm	Cardiac		350	Arg1 Tnni1 Wnt2 Gata6 1010001N08Rik Hand2	See auto-annotation; Nkx2-5, Tnni1, Myl1, others (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
PxMeso2	58	Mesoderm	Paraxial		295	Meox1 Aldh1a2 Hoxa1 Meox2 P3h2 Ism1	Tcf15, Arg1, Meox1, Meox2 at E8 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
PxMeso1	59	Mesoderm	Paraxial		839	Tbx1 Gm12829 Prrx2 Colec12 Col23a1 Tmem119	Shares markers with 58, but lower levels
	60	Mesoderm	Pharyngeal		281	Tcf21 Msc Hlx Col13a1 Gng11 Edn1	Tcf21, Msc, Tbx1 (doi: 10.1073/pnas.1208690109)
NeurCrest2	61	Neural crest	Neural crest		800	Fam212a Emc8 Plcg2 Ccl6 Mogat2 Timm8a1	See auto-annotation
NeurCrest1	62	Neural crest	Neural crest		499	Sox10 Klhl21 Plp1 Ets1 Grrp1 Tmc6	See auto-annotation
	63	Neural crest	Neural crest		95	Sox10 Erbb2 Plp1 Cdh6 Ednra Npr3	See auto-annotation
	64	Neural crest	Neural crest	Trunk and vagal neural crest	506	Sox10 Fam89a Cdh19 Erbb3 Heyl Npr3	See auto-annotation
PxMeso3	65	Bad cells	Undefined		610	Meox1 Hbb-y Foxc2 Pgk1 Cnn2 Eno3	Low UMI, No markers on heatmap
	66	Bad cells	Undefined	Failed spatial mapping	2467	Alx1 Gm10320 Glipr2 Mt1 Cnn2 Mdfi	Low UMI
	67	Bad cells	Undefined	Failed spatial mapping	3807	Crabp2 Gm10320 Hes5 Mt1 Lix1 Id1	Low UMI
	68	Bad cells	Undefined	Failed spatial mapping	3764	Mapk12 Lhx2 Shisa2 Fam181b Rab39 Tgif1	Low UMI
Ectoderm5	69	Endoderm	Gut		84	Pyy Nkx2-3 Cldn4 Krt18 Prdm1 Nkx2-6	See FGut auto-annotation
Ectoderm3	70	Endoderm	Gut		224	Nkx2-5 Gm20467 Capn6 Krt18 Crb3 Kdf1	Pharyngeal endoderm as suported by Pax9, Nkx2-3, Nkx2-5 at E8 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Ectoderm4	71	Endoderm	Gut		162	Pax9 Smoc2 Cldn6 Has2 Crb3 Cldn8	Pax9, Smoc2, Gpx2 at E8 (https://marionilab.cruk.cam.ac.uk/MouseGastrulation2018/)
Ectoderm1	72	Ectoderm	Early ectoderm		937	Rab25 Lamtor3 Cldn6 Cldn7 Spint1 Kdf1	Primarily E8; Heterogeneous mixture of cells that are Six1/Six4+ or Pax2/Pax8+, suggesting preplacodal (https://doi.org/10.1016/j.ydbio.2006.03.009)
Ectoderm2	73	Ectoderm	Dorsal early ectoderm		86	Wnt6 Platr22 Gjb3 Tmem54 Slc2a3 Tacstd2	Primarily E8; Bmp2 (PMID: 9187146)
	74	Ectoderm	Undefined	Skin	14	Foxi2 3830417A13Rik Gm16136 Perp Prss8 Ldoc1	Doublets? Ventricular zone auto-annotation
Surfecto	75	Ectoderm	Surface ectoderm	Skin	492	Krt7 4631405K08Rik Trp63 Fermt1 Cdh3 Pdlim1	E9-10; Expresses Trp63 (10.1007/s00018-017-2701-z); Expresses Sostdc1 (DOI: 10.1242/dev.174888)
OticV	76	Ectoderm	Otic vesicle	Otic vesicle	183	Oc90 Cldn9 Tbx2 Epcam Cdh3 Hs3st6	See IEar auto-annotation
PharEpi	77	Ectoderm	Pharyngeal epithelium	Skin of pharynges, somites/dermatomes(?)	210	Vgll2 Pax1 Cldn4 Plet1 Igfbp5 Gdnf	Expresses Pax1 (8565834); Expresses Vgll2 (https://doi.org/10.1016/j.ydbio.2011.06.034)
OrEcto1	78	Ectoderm	Oral ectoderm	Oral region epithelium	116	Vgll2 Ntf5 Trp63 Fermt1 Bcam Pdgfa	Pitx1/2 is enriched; Expresses Fgf8 and Vgll2 (DOI: 10.1126/sciadv.abb0119); Vgll2 (https://doi.org/10.1016/j.ydbio.2011.06.034), Also expresses Sox14, Emx1, Col25a1.
LensEcto	79	Ectoderm	Lens	Lens, surface ectoderm	280	Aldh1a3 Hapln1 Upk3bl Fermt1 Ccdc68 Sp6	Hmx1 (https://doi.org/10.1016/S0925-4773(00)00488-3), Pax6, Six3, Meis1, Meis2 (https://doi.org/10.1371/journal.pgen.1006441)
OrEcto2	80	Ectoderm	Oral ectoderm	Oral ectoderm, surface ectoderm of pharynges, caudal tip of neural tube	75	Aldh1a3 Stk26 Krt14 Fermt1 Bmp4 Pdgfa	Enriched in Pitx2, Krt14, Lef1 (doi: 10.1242/dev.186023, doi:10.1242/dev.174888); Bmp4 (doi: 10.1101/gad.12.23.3764, https://doi.org/10.1016/S0092-8674(05)80083-2)
Ectoderm6	81	Ectoderm	Adenohypophyseal placode	Somitic and oral ectoderm, optic cup, Rathke's pouch?	188	Pitx1 Gm12446 Upk3bl Fermt1 Cryab Foxe1	Pitx1/2 is enriched; Expresses Hesx1 (https://doi.org/10.1016/j.ydbio.2006.03.009)
NasPitL	82	Ectoderm	Lateral nasal pit	Lateral nasal process/placode?	204	Six6 Sema3d Cldn4 Cldn3 Esrp1 Cldn8	Expresses Fgf8 (doi: 10.1242/dev.02143); Expresses Pax7 (https://doi.org/10.1016/S0896-6273(00)00121-5); Expresses Fgf8, Fgf9 and Fgf17 (https://doi.org/10.1016/S0925-4773(00)00518-9)
OlfPit1	83	Ectoderm	Olfactory pit	Nasal pit	320	Espn Dlx6 Mapk13 Cldn3 Grhl2 Rasef	Expresses Dmrt3 (https://doi.org/10.1016/S0925-4773(03)00094-7); Expresses Pax6, Six3, Rprm, Pcdh19, Fgf12, Mecom that are known to mark olfactory epithelium (DOI: 10.1242/dev.174888)
OlfPit2	84	Ectoderm	Olfactory pit	Vomeronasal organ	48	Aldh1a3 Arhgap27os2 Upk3bl Cldn7 Esrp1 St14	Pitx1 is enriched but not Pitx2 (doi:10.1101/gad.13.4.484); Expresses Aldh1a3 (doi: 10.1016/j.ydbio.2006.11.035); Expresses Dmrt3 (https://doi.org/10.1016/S0925-4773(03)00094-7)
	85	Ectoderm	Undefined	Failed spatial mapping	1029	Aldh1a3 Anxa2 Hey1 Krt18 Ap1m2 Pdlim1	Bad cells? Top enriched genes are erythrocyte genes; Low UMI
OlfEpit	86	Ectoderm	Olfactory epithelium		11	Acsm4 Sult1e1 Fmo6 Pla2r1 Cyp2g1 Eya4	Related to 83; Expresses Aox2 (doi: 10.1074/jbc.M408734200)
	87	Blood	Undefined		29	Ccdc190 Arhgef18 Hepacam Cldn10 Dnah9 Gm973	Doublets? Astroependymal markers, relatively high doublet score
	88	Blood	Undefined		28	Hbb-bt 2610035D17Rik Prss23 Fech Cdk6 Antxr1	Doublets? Radial glia markers, relatively high doublet score
	89	Blood	Undefined		29	Hbb-bt Adcyap1r1 Hbb-bs Ramp1 Mmd2 Mgst1	Doublets? Radial glia markers, relatively high doublet score
	90	Blood	Undefined		20	Olig1 Zfp141 Olig2 Pdgfra Cbr3 Itpr2	Doublets? OPC markers, relatively high doublet score
	91	Blood	Undefined		10	Dscaml1 Klhl12 Hba-a1 Fech Syt16 Fam241b	Doublets? Rbfox3
	92	Blood	Undefined		33	Hbb-bt Pcdh8 Hbb-bs Fech Snca Rbfox1	Doublets? Rbfox3
	93	Blood	Undefined		101	Hbb-bt Rundc3b Fam46c Fech Snca Blvrb	Doublets? Erythrocyte and @VGLUT2
	94	Blood	Undefined		108	Hbb-bt Gad1 Hbb-bs Fech Snca Blvrb	Doublets? Erythrocyte, @VGLUT2 and @GABA
	95	Blood	Undefined		138	Hbb-bt Lhx9 Hbb-bs Slc25a37 Hbq1b Blvrb	Doublets? Erythrocyte and @VGLUT2
	96	Blood	Undefined		32	Hbb-bt Insm1 Hbb-bs Fech Snca Kat2b	Doublets? Erythrocyte and @VGLUT2
Ery1	97	Blood	Erythrocyte		5189	Alas2 Tubb2b Ptp4a3 Tubb3 H3f3b Fam220a	See auto-annotation
Ery2	98	Blood	Erythrocyte		1827	Hbb-bt Hbq1a Isg20 Fech Snca Rec114	See auto-annotation
Ery3	99	Blood	Erythrocyte		860	Tspo2 Ube2l6 Trim10 Gypa F930017D23Rik Dhrs11	See auto-annotation
Ery4	100	Blood	Erythrocyte		42	Tmcc2 Irgm2 Slfn14 Tspan8 F930017D23Rik Epb42	See auto-annotation
Ery5	101	Blood	Erythrocyte		42	Car1 Ermap Cldn13 6030468B19Rik Nxpe2 Pklr	See auto-annotation
EryProg1	102	Blood	Erythroid progenitor		174	Mrap Cpne7 Klf1 Gata1 Smim1 Mir142hg	See auto-annotation
EryProg2	103	Blood	Erythroid progenitor	Failed spatial mapping	228	Cited4 Csf2rb Klf1 Hbb-bh1 Smim1 Pklr	See auto-annotation
EryProg3	104	Blood	Erythroid progenitor	Failed spatial mapping	1011	Cited4 Dnaja4 Klf1 Hbb-bh1 Acp5 Pklr	See auto-annotation
EryProg4	105	Blood	Erythroid progenitor		2042	Hsd3b6 Gm43661 Pdzk1ip1 Ncf4 Kel Hba-x	Expresses erythroid progenitor markers
EryProg5	106	Blood	Erythroid progenitor	Failed spatial mapping	641	Hemgn Rnf212 Rhd Icam4 Hbq1b Hba-x	See auto-annotation
	107	Blood	Undefined		97	Hsd3b6 Gm32061 Rhd Slc4a1 Kel AC117197.1	Doublets? High doublet score, @Pall and VZone auto-annotation
	108	Blood	Undefined	Failed spatial mapping	170	Cited4 Ears2 Klf1 Hbb-bh1 Acp5 Kcnn4	Doublets? High doublet score, Fibroblast markers
Chondro	109	Fibroblast	Chondrocytes		21	Matn1 Cnmd Col9a3 Acan Col2a1 Col11a2	Expresses Matn1, Cnmd, Acan, Runx1, Foxa3, Sox5 and Sox6
FibroE1	110	Fibroblast	Early fibroblasts	Trunk connective tissue	356	Hpse2 Six2 Alkal2 Tbx15 Gm29418 Runx2	Expresses Lum and localization
FibroE2	111	Fibroblast	Early fibroblasts	Heart (pericardium), meninges	1169	Dkk2 Veph1 Col3a1 Col8a2 Msx2 Mkx	Expresses Lum and localization
FibroE3	112	Fibroblast	Early fibroblasts		550	Lum Halr1 Col3a1 Osr1 Lamc3 Bgn	See age distribution, auto-annotation
	113	Fibroblast	Undefined		68	Cldn11 Mri1 Fxyd5 Lox Sned1 Crispld1	Seems to overlap between dura and perivascular fibroblast-like cells on the t-SNE and in expression
	114	Fibroblast	Undefined		78	Col1a1 Nme2 Col1a2 Lox Wisp1 Crispld1	Cells are spread across early fibroblast, perivascular fibroblast-like cells, and dura on the t-SNE
FibroPV	115	Fibroblast	Perivascular fibroblast-like cells		318	Tcf21 Mgp Tgfbi Matn2 Adam12 Vstm4	Checked top markers in https://doi.org/10.1038/nature25739; http://betsholtzlab.org/VascularSingleCells/database.html
Pia1	116	Fibroblast	Pia 1		267	Dcn Kcne4 Cxcl16 A2m Olfml3 Col6a2	Expresses S100a6, Ngfr, Lama2; Also expresses Spon1 which might suggest ventral forebrain: https://doi.org/10.1016/j.devcel.2020.06.009
Pia2	117	Fibroblast	Pia 2		1489	Slc6a13 Adra1a Itih5 S100a6 Nupr1 Gm30624	Expresses S100a6, Ngfr, Lama2; Also expresses Tff3 which might suggest ventral mid/hindbrain: https://doi.org/10.1016/j.devcel.2020.06.009
Pia3	118	Fibroblast	Pia 3		895	Dcn C1qtnf7 Apod Cxcl12 Lrrc17 Col6a2	S100a6, Ngfr, Lama2; Also expresses Dusp6, Pla2g7 might suggest dorsal forebrain: https://doi.org/10.1016/j.devcel.2020.06.009
	119	Fibroblast	Undefined		57	Cldn11 Pir C1qtnf2 Sidt1 Slc7a11 Col6a2	Doublets? Expresses Flt1, Cldn5, Kcnj8
Meninges1	120	Fibroblast	Intermediate meninges 1		1163	Slc6a13 Sod3 Gjb6 Sidt1 Cfh Mrgprf	Low expression of arachnoid markers Ptgds, Crabp2 and pia marker S100a6
	121	Fibroblast	Undefined		43	Mfap5 Krtdap Igfbp6 S100a6 Nupr1 Igfbp3	Doublets? Expresses epithelial markers Krtdap and Sbsn (https://doi.org/10.1002/dvdy.21099)
Dura	122	Fibroblast	Dura		408	Nov Slc16a9 Fxyd5 Thbd Slc47a1 Efemp1	Expresses Alpl, Foxc2, Nov, Fxyd5 (https://doi.org/10.1016/j.devcel.2020.06.009)
ABC	123	Fibroblast	Arachnoid barrier cells		16	Lypd2 Dapl1 Asgr1 Itgbl1 Itih2 Klf5	Enriched in Cdh1 (https://doi.org/10.1016/j.devcel.2020.06.009)
Meninges2	124	Fibroblast	Intermediate meninges 2		133	Cldn11 Mamdc2 Gjb2 Fmod Adam12 Ogn	Expresses Ptgds but also low levels of S100a6, Nov
Arachnoid	125	Fibroblast	Arachnoid		619	Ptgds Nphs2 Serpind1 Sult1a1 Nupr1 Slc13a3	Expresses Ptgds (https://doi.org/10.1016/j.devcel.2020.06.009)
	126	Fibroblast	Undefined		32	Ptgds Upk3a Serpind1 Cmbl Nupr1 Slc6a12	Doublets? Top enriched genes are all expressed in arachnoid
	127	Fibroblast	Undefined		31	Srgn Fst Slc6a20a Aqp8 Lamb1 Col4a1	Doublets? Expresses erythrocyte markers
	128	Vascular	Undefined		18	Ranbp3l Arhgef4 Islr Wnt4 Adam12 Lama2	Doublets? Relatively high doublet score, and astroependymal and fibroblast auto-annotation
	129	Vascular	Undefined		17	Ptgds Kif28 Asgr1 Aebp1 Nupr1 Slc13a4	Doublets? Relatively high doublet score
	130	Vascular	Undefined		140	Dcn Eml6 Slc22a6 Sidt1 Nupr1 Emp3	Doublets? Relatively high doublet score, and many auto-annotations
	131	Vascular	Undefined		19	Slc6a13 Bsn Ctsk Vtn Adamts12 Vstm4	Doublets? Relatively high doublet score, and many auto-annotations
	132	Vascular	Undefined		50	Kcnj8 Galntl6 Mmp9 Gm14005 Tbxa2r Pdgfrb	Doublets? Relatively high doublet score
	133	Vascular	Undefined		193	Cldn5 Col6a1 Ly6c1 Vwa1 Adgrl4 Epas1	Doublets? Relatively high doublet score, and VEC and VLMC autio annotation
	134	Vascular	Undefined		34	Cldn5 Slc27a1 Ctla2a Esam Ecscr Hmgcs2	Doublets? Relatively high doublet score, and expresses erythrocyte genes
Peric1	135	Vascular	Pericyte		1139	Kcnj8 Aspn Rgs5 Ndufa4l2 Tbxa2r Gper1	See auto-annotation
Peric2	136	Vascular	Pericyte		325	Kcnj8 Dmp1 Rgs5 Gm14005 Foxs1 Itga1	See auto-annotation
VSM1	137	Vascular	Vascular smooth muscle		70	Acta2 Slc16a12 Tagln Map3k7cl Hspb2 Myl9	See auto-annotation
VSM2	138	Vascular	Vascular smooth muscle		175	Actg2 Eln Myh11 Mustn1 Cnn1 Crispld2	See auto-annotation
Vendo1	139	Vascular	Endothelial		86	Fbln5 Gja5 Tm4sf1 Vwf Icam2 Sox7	Expresses Cldn5 and Flt1
Vendo2	140	Vascular	Endothelial		54	Pglyrp1 Taf4b Ptprb Slco1c1 Erg Zfp366	See VEC auto-annotation
Vendo3	141	Vascular	Endothelial		362	Pglyrp1 Car5a Flt1 Slco1c1 Adgrl4 Epas1	See VEC auto-annotation
Vendo4	142	Vascular	Endothelial		632	Higd1b Chp2 Rgs5 Atp13a5 Apold1 Epas1	See VEC auto-annotation
Vendo5	143	Vascular	Endothelial		349	Gja4 1700097N02Rik Ly6c1 Slco1c1 8430408G22Rik Epas1	See VEC auto-annotation
Vendo6	144	Vascular	Endothelial		803	Pglyrp1 Rhbdl2 Abcf3 Slco1c1 Slc22a8 Grap	See VEC auto-annotation
Vendo7	145	Vascular	Endothelial		567	AU021092 Tmem154 Slc38a5 Foxq1 Adgrl4 Grap	See VEC auto-annotation
Vendo8	146	Vascular	Endothelial		249	Cd34 Adprm Aplnr Cd93 Tie1 Gimap6	See VEC auto-annotation
Vendo9	147	Vascular	Endothelial		437	Clec14a Foxf1 Tmem252 Slco2a1 Icam1 Sox7	See VEC auto-annotation
	148	Vascular	Undefined	Heart, ventricle	18	Clec1b Ctse Col15a1 Gngt2 Dysf Gimap6	Doublets? Expresses erythrocyte markers
	149	Vascular	Undefined		11	Gm20532 Gm9917 Htra3 Ecm1 Tie1 Npr1	Doublets? Expresses erythrocyte markers
	150	Vascular	Undefined		37	Esm1 Abcc9 Gpihbp1 Pecam1 Robo4 Cyyr1	Doublets? Expresses erythrocyte markers
Vendo10	151	Vascular	Endothelial		83	Fam167b Gsg1 Plvap Lrg1 Myct1 Cyyr1	Expresses Cldn5 and Flt1
Angiob2	152	Vascular	Angioblast	Scattered	577	Clec1b Prl3b1 Emcn Cdh5 Mmrn1 Gimap4	See Angio auto-annotation; Plvap
Angiob3	153	Vascular	Angioblast		748	D030007L05Rik Gpr182 Plvap Gngt2 Kcne3 Exoc3l4	See Angio auto-annotation; Plvap
	154	Immune	Undefined		10	Ctss Bcan C1qb Pld4 Laptm5 Cd14	Doublets? Also expresses astroependymal markers, relatively high doublet score
	155	Immune	Undefined		27	Fcer1g Eng C1qc Csf1r Ltc4s Cyth4	Doublets? Also expresses endothelial markers, relatively high doublet score
	156	Immune	Undefined		135	Tyrobp Rab11fip5 C1qc Fcgr3 Cd86 Adgre1	Doublets? Also expresses neuronal markers, relatively high doublet score
MglATA	157	Immune	Axon tract-associated microglia		510	Spp1 Rab7b Ly86 Ccl9 Gpr34 Mpeg1	Spp1: https://doi.org/10.1016/j.immuni.2018.11.004
MglCyc	158	Immune	Cycling microglia		415	P2ry12 Tnfrsf1b Ly86 Fcrls Cx3cr1 Aif1	See auto- annotation. Expresses P2ry12
Mgl	159	Immune	Non-cycling microglia		786	P2ry12 Gm13710 Trem2 Ccl4 Gpr34 Cd53	See auto- annotation. Expresses P2ry12
	160	Immune	Undefined		29	Ccl3 Hba-a2 C1qa Csf1r Nlrp3 Aif1	Doublets? Also expresses erythrocyte markers
Pvm3	161	Immune	Non-cycling perivascular macrophages		1401	Ccl7 Cd209f Ccl2 Cxcl2 Ccl12 F13a1	Expresses Lyve1; see autoannotation
PvmCyc	162	Immune	Cycling perivascular macrophages		199	Lyve1 Plau Mrc1 Pf4 Ms4a6c Ms4a6b	Expresses Lyve1; see autoannotation
MacroE	163	Immune	Early macrophage	Lens of the eye (hyalocyte progenitors)	272	Rac2 Eef2kmt Spi1 Ighm Ms4a6c Ms4a6b	See age distribution and auto-annotation.
	164	Immune	Undefined		12	Ms4a7 Rarres2 Ccl24 Pf4 Cd86 Cd14	Doublets? Fibroblast markers
Neutroph	165	Immune	Infiltrating immune		11	S100a9 Ngp S100a8 Camp BC100530 Ltf	Could be neutrophils based on Ngp, Camp expression
Mono	166	Immune	Infiltrating immune		39	Lyz2 Sirpb1c Lgals3 Hp Ifitm6 Alox5ap	Could be monocytes: expresses Ly6c2, Ccr (https://www.nature.com/articles/nn.2923), S100a9/MAC387 (https://doi.org/10.1038/srep32900)
Macro	167	Immune	Infiltrating immune		53	Cd74 Rgs1 Cd52 Ccr2 Napsa Ifi27l2a	Could be macrophages: expresses C1qa, C1qb
MastBaso	168	Immune	Infiltrating immune		20	Cma1 Tpsb2 Cpa3 Hdc Mcpt8 Prss34	Could be mast and/or basophil cells: expresses Hdc, Gata2, Fcer1a, Kit, Il4, Il13 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405376/)
Immune1	169	Immune	Infiltrating immune		35	Mpo BC035044 Ptprcap Mzb1 Arhgdib Cd79b	Heterogenous cycling cells; See cycling auto-annotation
Tcell	170	Immune	Infiltrating immune		19	Ltb Il22 Il7r Pdcd1 Cxcr6 Cd7	Could be T-cells: expresses Il7r, Tcrg-C1
Platelet	171	Blood	Platelet	Scattered	72	Ppbp Gp9 Gp5 Pf4 Treml1 Alox12	See auto-annotation
AstroF	172	Glioblast	Forebrain astrocyte		821	Mt3 Gm28175 Cbs Smpdl3a Baalc Adhfe1	See tissue distribution; expresses Aqp4 and Tnc
GblF1	173	Glioblast	Forebrain		147	Gm29260 Igfbp4 Rgcc Megf10 Napepld Ddah1	See tissue distribution; same clade as forebrain astrocytes
GblF2	174	Glioblast	Forebrain		224	Mt3 E2f8 Ptx3 Lipg Ptprz1 Shc3	See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF3	175	Glioblast	Forebrain		248	Mt3 H19 Ptx3 Lipg Aspm Cdkn3	See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF4	176	Glioblast	Forebrain		252	Qrfpr Aldh1l1 Rlbp1 Slc1a3 Slc15a2 Abhd4	See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF5	177	Glioblast	Forebrain		367	Gm29260 Lrp4 Htra1 Tmem132b Gm11627 Rgs20	See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF6	178	Glioblast	Forebrain		211	Gm29260 Phactr2 Rlbp1 Tmem132b Gm11627 Rgs20	See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
GblF7	179	Glioblast	Forebrain		127	Ccdc80 Gas2l3 Rlbp1 Slco1c1 Ckap2 Actr3b	See tissue distribution; same clade as forebrain astrocytes; expresses Tnc and Slco1c1
RglDF1	180	Radial glia	Dorsal forebrain		113	Thrsp Pdlim3 Hopx Adamts19 Emid1 Rgs20	See tissue distribution, auto-annotation
RglDF2	181	Radial glia	Dorsal forebrain		160	E330013P04Rik Gmpr Htra1 Loxl1 Mt2 Tnfrsf19	See tissue distribution, auto-annotation
RglDF3	182	Radial glia	Dorsal forebrain		59	Ccdc80 Usp50 Ltbp1 Loxl1 Celsr1 Samd4	See tissue distribution, auto-annotation
RglDF4	183	Radial glia	Dorsal forebrain		556	E330013P04Rik Kif24 Ltbp1 Cav1 Hes1 Csmd1	See tissue distribution, auto-annotation
RglDF5	184	Radial glia	Dorsal forebrain		1052	Gm29260 Gm26604 G630016G05Rik Jph1 Thsd4 Rgs20	See tissue distribution, auto-annotation
RglDF6	185	Radial glia	Dorsal forebrain		616	Dct 2810459M11Rik Cdon Mir670hg Ndrg2 Rgs20	See tissue distribution, auto-annotation
RglDF7	186	Radial glia	Dorsal forebrain		922	Gm29260 Gnb2 Etl4 Jph1 Hes1 Rgs20	See tissue distribution, auto-annotation
RglDF8	187	Radial glia	Dorsal forebrain		843	Gm29260 Pknox1 Etl4 Jph1 Plce1 Rgs20	See tissue distribution, auto-annotation
RglDF9	188	Radial glia	Dorsal forebrain		999	Creb5 Gm19554 Ptx3 Jph1 Lix1 Bmpr1b	See tissue distribution, auto-annotation
RglDF10	189	Radial glia	Dorsal forebrain		1024	Nr2e1 A630089N07Rik Katnal2 Jph1 Gli3 Efnb1	See tissue distribution, auto-annotation
RglDF11	190	Radial glia	Dorsal forebrain		497	Dmrt3 Dsn1 Dmrta2 Gas1 Sfrp1 Psrc1	See tissue distribution, auto-annotation
RglDF12	191	Radial glia	Dorsal forebrain		830	Dmrt3 Ncapg2 Dmrta2 Lrrn1 Gli3 Ung	See tissue distribution, auto-annotation
RglDF13	192	Radial glia	Dorsal forebrain		965	Dmrt3 Hist1h2an Rbm20 Jph1 Hist1h1b Fut9	See tissue distribution, auto-annotation
RglDF14	193	Radial glia	Dorsal forebrain		1106	Dmrt3 Msrb3 Dmrta2 Gas1 Plagl1 Tnfrsf19	See tissue distribution, auto-annotation
RglDF15	194	Radial glia	Dorsal forebrain		237	E330013P04Rik Dmrt1 Rhcg Lrrn1 Tmem132c Flrt3	See tissue distribution, auto-annotation
RglCH1	195	Radial glia	Cortical hem		121	Rspo1 Nim1k Rspo3 Jph1 Msx2 Bmp5	See tissue distribution, auto-annotation
RglMHB1	196	Radial glia	Midbrain-hindbrain boundary	Midbrain-hindbrain boundary on the hindbrain side (isthmus)	712	Fgf17 Fgf18 Cnpy1 Klhl14 Abcc4 Notum	See tissue distribution, auto-annotation
RglMHB2	197	Radial glia	Midbrain-hindbrain boundary	Isthmus and dorsal r1 of the hindbrain	239	Hes3 Adra1a Cnpy1 Nr2f6 En2 Dtx4	See tissue distribution, auto-annotation
RglMHB3	198	Radial glia	Midbrain-hindbrain boundary	Caudal and dorsal midbrain (caudal m1A)	128	Hes3 Hist1h2ag Cnpy1 Efna2 Greb1 C130026L21Rik	See tissue distribution, auto-annotation
RglMHB4	199	Radial glia	Midbrain-hindbrain boundary	Midbrain-hindbrain boundary on the midbrain side (m2)	301	Trh Wnt1 2700046A07Rik Efna2 4930426D05Rik Celrr	See tissue distribution, auto-annotation
RglVM1	200	Radial glia	Ventral hindbrain	Basal plate of diencephalon, midbrain and hinbrain	731	Nkx2-9 Hoxb3os Nkx6-1 Adgrv1 Cmtm8 Shroom3	See tissue distribution, Hoxa2+; Nkx6-1+, Nkx2-2+, Foxa2+, Pax7-
RglVM2	201	Radial glia	Ventral midbrain	Midbrain alar ventrolateral plate (m1AVL)	1313	Nkx6-2 Gm2164 Pappa Igdcc3 Greb1 Wnt7a	See tissue distribution, Tal2+; Nkx2-2+, Foxa2+, Nkx6-1+, Nkx6-2+
RglDM1	202	Radial glia	Dorsal midbrain	Alar plate of the midbrain and diencephalon	2045	Wfdc1 Gm20083 Ildr2 Zbtb16 Greb1 Dtx4	See tissue distribution, Tal2+; Pax3+, Pax7+
RglHRP	203	Radial glia	Hindbrain roof plate	Alar plate of the hindbrain and spinal cord	1367	Msx3 Cep135 Casz1 Wfikkn1 Fam81a Eya4	See tissue distribution, Expresses Hoxa2, Wnt1, Lmx1a
RglDH1	204	Radial glia	Dorsal hindbrain	Caudal part of hindbrain r1	922	Msx3 Pipox Casz1 Wfikkn1 Greb1 Dtx4	Neither midbrain- nor hindbrain-specific markers, but between hindbrain roof plate and midbrain-hindbrain boundary on t-SNE. Pax3 and Pax7.
RglDH2	205	Radial glia	Dorsal hindbrain	Mediolateral (basal plate?) part of hindbrain r2-r8 and spinal cord	1523	Hoxa2 Insl6 Sfrp2 Irx3 Greb1 Moxd1	See tissue distribution, Expresses Hoxa2, Pax3 and Pax7
RglMBP	206	Radial glia	Midbrain basal plate	Basal plate of the midbrain (m1B)	507	Lrtm1 Dmbx1 Ntn1 Sulf1 Ephb2 Stxbp6	See tissue distribution; Expresses Sim1, Foxa2; low levels of Wnt1 and Lmx1a
RglMFP	207	Radial glia	Midbrain floor plate	Floor plate of the midbrain (m1F) and caudal diencephalon (p1F, p2F)	342	Dkk2 2610027F03Rik Foxa1 Metrnl Cmtm8 Trabd2b	See tissue distribution; Expresses Shh, Wnt1 and Lmx1a
RglHFP	208	Radial glia	Hindbrain floor plate	Floor plate of the hindbrain and spinal cord	265	9030622O22Rik Map3k5 Spon1 Metrnl Cmtm8 Sh2d4a	See tissue distribution; Expresses Hoxb2, Shh and Foxa2
RglHypFP	209	Radial glia	Hypothalamic floor-plate like	Terminal hypothalamus and preoptic area (THy, PO)	327	Six6 Shh Six3 4930447C04Rik Lrp2 Mme	See tissue distribution; Expresses Shh, Six3, Six6 and Rax
RglF1	210	Radial glia	Forebrain	Floor plate of peduncular hypothalamus (PHy)	187	Fgf10 Tbx3os1 Tbx3 Tbx3os2 Gpr50 Nkx2-4	See tissue distribution; Expresses Emx2;
RglF2	211	Radial glia	Forebrain	Peduncular hypothalamus (basal plate) (PHy)	59	Dkk1 Scrib Scube1 Cdh6 A630012P03Rik Gpc3	Expresses Emx2, low Wnt8b and Shh.
RglZLI	212	Radial glia	Zona limitans intrathalamica	Ventral and rostral diencephalon (p2 and p3)	87	Dbx1 Sim2 Barhl2 Cdh6 Tpbg Gpc3	Expresses Shh and Wnt8b, (doi: https://doi.org/10.1523/JNEUROSCI.0726-12.2013)
RglRP	213	Radial glia	Roof plate	Roof plate of midbrain, diencephalon and pallium	495	Galnt12 Wnt1 Wnt3a Large2 Tmem132c Stx3	Expresses Tal2, Wnt1 and Lmx1a
RglCH2	214	Radial glia	Cortical hem	Medial caudal pallium (cortical hem)	865	Wnt8b Qprt Rspo3 Large2 Mecom Slc25a21	Emx2, Wnt8b
RglACP	215	Radial glia	Anteromedial cerebral pole	Medial rostral subpallium	347	Fgf17 Cytl1 Il17rd Wfdc2 Mecom Dusp5	See tissue distribution; Six3, Fgf8; Fgf17
RglF3	216	Radial glia	Forebrain	Caudal subpallium (ganglionic eminence)	929	Nkx2-1 Lpl Ano1 Ccnd1 Mbip Mest	See tissue distribution, Forebrain markers
RglF4	217	Radial glia	Forebrain	Basal plate of forebrain (p1,p2,p3,PHy,THy)	519	Nkx2-9 Gm29508 Dach2 Ptch1 Crb2 Sox2	See tissue distribution, Forebrain markers
RglF5	218	Radial glia	Forebrain	Subpallium	2523	Nr2e1 Slc12a7 Hmga2 Wnt5b Mecom Filip1	See tissue distribution, Forebrain markers
RglF6	219	Radial glia	Forebrain	Failed spatial mapping	73	Fgf8 Pask Scd1 Prtg Lrp2 Usp51	See tissue distribution, Forebrain markers
RglF7	220	Radial glia	Forebrain	Lateral pallium	315	Emx2 Zfp992 Dmrta2 Gpc4 Gli3 Efnb1	See tissue distribution, Forebrain markers
RglF8	221	Radial glia	Forebrain	Failed spatial mapping	173	Fgf17 Mir9-3hg Spry1 Gm29266 Rmst Shroom3	See tissue distribution, Forebrain markers
RglF9	222	Radial glia	Forebrain		136	Fgf17 5330434G04Rik Il17rd Gm29266 Rmst Fbxw4	See tissue distribution, Forebrain markers
RglF10	223	Radial glia	Forebrain		46	Fgf17 C130060K24Rik Spry1 Nr6a1os Gbe1 Dusp6	See tissue distribution, Forebrain markers
RglF11	224	Radial glia	Forebrain		280	Nkx2-1 Pcdh11x Tox2 Slit2 Mbip Shc3	See tissue distribution
RglF12	225	Radial glia	Forebrain		1056	Nr2e1 Lama1 Ptx3 Fgfr3 Nrarp Sema5b	See tissue distribution
RglF13	226	Radial glia	Forebrain		417	Gsx2 Wdr36 Rgcc Adgrv1 Napepld Sema5b	See tissue distribution
RglF14	227	Radial glia	Forebrain		1766	Gsx2 Nkx2-3 Ano1 Acss1 Nes Notch1	See tissue distribution
RglDD	228	Radial glia	Dorsal diencephalon		719	Gm29478 Fst Barhl2 Adgrv1 Nes Cep112	See tissue distribution; Barhl2+
RglH1	229	Radial glia	Mixed region	Ventromedial hindbrain, spinal cord (basal plate)	959	Vit Galnt7 Wnt7b Ednrb Nrarp Adgra1	See tissue distribution
RglM1	230	Radial glia	Midbrain	Midbrain-hindbrain boundary diffuse	347	Helt 2610027F03Rik Cnpy1 Adgrv1 Nrarp Itgb8	See tissue distribution
RglM2	231	Radial glia	Midbrain		570	Pax3 Ostm1 Pax7 Boc Irx5 Mum1	See tissue distribution
RglM3	232	Radial glia	Midbrain	Midbrain and diencephalon roof plate	599	Pax3 Slc45a3 Ascl1 Egfem1 Mecom Cep112	See tissue distribution
RglM4	233	Radial glia	Midbrain	Midbrain alar plate	822	Fam181a Cntrob Pdzph1 Boc Irx5 Mum1	See tissue distribution
RglM5	234	Radial glia	Midbrain		595	Otor 2610027F03Rik Prima1 Irx6 Scml4 Efna5	See tissue distribution
RglH2	235	Radial glia	Mixed region	Hindbrain dorsolateral (alar plate)	636	Msx3 Dlgap2 Casz1 Boc Zic3 Dtx4	See tissue distribution
RglH3	236	Radial glia	Hindbrain	Hindbrain dorsolateral (alar plate)	351	Msx3 Gm31135 Glra1 Rfx4 Msx2 Id1	See tissue distribution
RglH4	237	Radial glia	Hindbrain		100	Nppc Hoxc5 Glra1 Pdpn 9430041J12Rik Igsf11	See tissue distribution
Chpl1	238	Choroid plexus	Choroid plexus		220	Htr2c 9130230L23Rik Kcne2 Aqp1 Tmem72 Wfikkn2	See auto-annotation
Chpl2	239	Choroid plexus	Choroid plexus		494	Ttr 2900040C04Rik Gstm2 Kcnj13 Fxyd1 Folr1	See auto-annotation
Chpl3	240	Choroid plexus	Choroid plexus		124	Cdc20b Slc4a5 Dynlrb2 Cfap126 Gm29538 Lrriq1	See auto-annotation
Chpl4	241	Choroid plexus	Choroid plexus		11	Cdc20b Angptl2 Kcne2 Kcnj13 Clic6 Cfap45	See auto-annotation
Epen1	242	Ependymal	Forebrain		204	3300002A11Rik Ccdc153 Tmem212 1700001C02Rik 1700012B09Rik Dmkn	See tissue distribution, auto-annotation
Epen2	243	Ependymal	Mixed region		117	Cdc20b Foxn4 Deup1 Meig1 Tekt4 Lrrc23	See tissue distribution, auto-annotation
	244	Ependymal	Undefined		58	Cdc20b Cybrd1 Dynlrb2 Meig1 1700007G11Rik Wdr63	See auto-annotation; some cells are enriched in neuronal markers Sgcz Cntn5 Svop Mapt Tmem130
RglSC	245	Radial glia	Spinal cord		60	1700007K13Rik Fas Mia Acot5 1700007G11Rik Traf1	Expresses Hoxb8
RglEpen1	246	Radial glia	Ependymal-like		91	Pdyn C230072F16Rik Clec3b Cfap52 Capsl 1700028P14Rik	Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglEpen2	247	Radial glia	Ependymal-like		194	P4ha3 Colgalt2 Ntn1 Cd36 Capsl Padi2	Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglEpen3	248	Radial glia	Ependymal-like		91	Anxa1 Kcnj16 Lgi3 4933407L21Rik Gm31592 Tnnt3	Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglEpen4	249	Radial glia	Ependymal-like		18	Anxa1 Gm13031 Lgi3 Corin Gm31592 Lama3	Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglEpen5	250	Radial glia	Ependymal-like		74	Ccdc3 Prss12 Spon1 Metrnl Fgl2 Gm867	Only low levels of Foxj1 and no Tmem212, but share some expression with ependymal cells (e.g. Tm4sf1, Dynlrb2, Meig1); Mousebrain.org: Of CNS cells, Tm4sf1, Plekha2, Ccdc3 expressed in ependymal cells
RglHyp1	251	Radial glia	Hypothalamus		19	Rax Col9a2 Adamtsl1 Zbtb7c Gstt1 Fosb	Expresses Rax, Nkx2-1, Six3 (https://doi.org/10.1523/JNEUROSCI.0913-12.2013); Expresses Six6 (https://doi.org/10.1002/dvdy.20463); Expresses Rax (https://developingmouse.brain-map.org/experiment/show/100085443); Expresses Tbx3 (https://developingmouse.brain-map.org/experiment/show/100085443). It could be tanycyte related: Rax, Crym (see EPN-T auto-annotation) Col23a1, Slc16a2, Col25a1, Vcan, Frzb (DOI: 10.1016/j.celrep.2017.03.004)
RglHyp2	252	Radial glia	Hypothalamus		71	Rax Cpa4 Fam183b Plcd4 Tekt1 Efhb	Rax, Nkx2-1, Six3 (https://doi.org/10.1523/JNEUROSCI.0913-12.2013); Six6 (https://doi.org/10.1002/dvdy.20463); Rax (https://developingmouse.brain-map.org/experiment/show/100085443); Tbx3 (https://developingmouse.brain-map.org/experiment/show/100085443). It could be tanycyte related: Rax, Crym (see EPN-T auto-annotation) Col23a1, Slc16a2, Col25a1, Vcan, Frzb (DOI: 10.1016/j.celrep.2017.03.004)
RglHyp3	253	Radial glia	Hypothalamus		51	Tgfb2 Crybb1 S100b Tst 0610040J01Rik Daam2	Mainly E16-17 and ventrothalamic, and Six6 basically confined to hypothalamus after E14.5 (https://doi.org/10.1002/dvdy.20463); Pax2 in optic chiasm, SCN (https://doi.org/10.1186/1471-213X-8-79)
RglHyp4	254	Radial glia	Hypothalamus		40	Thrsp Ddo Nfatc2 Plcd4 Eno4 Ocln	Mainly E17 and ventrothalamic cells, and Six6 basically confined to hypothalamus after E14.5 (https://doi.org/10.1002/dvdy.20463)
RglMHB5	255	Radial glia	Late isthmic organizer		17	1500015O10Rik Pax5 Mia Enkur Capsl Fbln2	Midbrain and hindbrain, E13.5 - E16; expresses Fgf8 and Fgf17 which label isthmic organizer and velum medullare in cerebellum (https://doi.org/10.1002/dvdy.22013)
Bgl1	256	Radial glia	Bergmann glia		372	Gdf10 1110032F04Rik Scube2 Abcb9 Grid2 Ctso	See tissue distribution; expresses Gdf10
Bgl2	257	Radial glia	Bergmann glia		220	Gdf10 Clrn1 Lmcd1 Grm3 Egfl6 Rgs20	See tissue distribution; expresses Gdf10
Bgl3	258	Radial glia	Bergmann glia		183	Gdf10 Cdkn2c Scube2 Grm3 Paqr8 Emp1	See tissue distribution; expresses Gdf10
RglMix1	259	Radial glia	Mixed region		76	Ttyh1 Ndufaf5 Vcam1 Adgrv1 Sox9 Kbtbd11	See tissue distribution
RglH5	260	Radial glia	Hindbrain		343	Cyp26b1 Cxcr4 Fgfbp3 Ednrb 9430041J12Rik Mgst1	See tissue distribution
	261	Radial glia	Undefined		109	Ptf1a Aldh1l1 Prss23 Cdh20 Paqr8 Serpine2	Doublets? Radial glia markers, Rbfox3
	262	Radial glia	Undefined		79	Thrsp Egfr Rlbp1 Sall3 Mfge8 Rgs20	Doublets? Radial glia markers, Rbfox3
RglDH3	263	Radial glia	Dorsal hindbrain		137	Fbxo2 Rnd1 AC154683.1 Gm5089 Draxin Hpgds	See tissue distribution; expresses Olig3; Atoh1 expression might suggest rhombic lip
RglDH4	264	Radial glia	Dorsal hindbrain		146	Fbxo2 Bmp6 Angptl1 Gm5089 Ccdc162 Hpgds	See tissue distribution; expresses Olig3
RglDH5	265	Radial glia	Dorsal hindbrain and spinal cord		137	Nppc Col14a1 Glis3 Cavin2 Naaa Pter	See tissue distribution; expresses Hoxb8 and Nppc, which is localized in the dorsal region of the developing spinal cord and hindbrain (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2757798/)
RglDH6	266	Radial glia	Dorsal hindbrain		50	Wt1 Cldn19 C1qtnf3 3100003L05Rik Myh8 Gm30191	See tissue distribution: Possibly close to the roof plate: No Wnt1 but expresses Lmx1a+, Msx1+, Pax6-, and Wt1: https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1002099
Pineal1	267	Pineal gland	Pineal gland		41	Esm1 Cp Jhy Ngf Bmp4 Krt15	Expresses Bsx (doi: 10.1242/dev.163477, https://developingmouse.brain-map.org/experiment/show/100073434, doi: 10.1007/s00429-014-0740-x)
Pineal2	268	Pineal gland	Pineal gland		66	Esm1 Cnmd Gm20757 Ddit4l Scara5 Kcna5	Expresses Bsx (doi: 10.1242/dev.163477, https://developingmouse.brain-map.org/experiment/show/100073434)
RglDE1	269	Radial glia	Diencephalon		94	Gm29478 Nrip3 Rspo3 Gm5089 Thsd4 St3gal6	Expresses Barhl2: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5191999/
RglDE2	270	Radial glia	Diencephalon		144	Gm29478 Casp2 Rspo3 Otx1 Rmst Cenpw	Expresses Barhl2: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5191999/
RglCH3	271	Radial glia	Cortical hem		468	Rspo2 Asb4 Rspo3 Rbm47 Clic6 Folr1	See @Hem auto-annotation; also contains choroid plexus cells
RglDERP1	272	Radial glia	Diencephalic roof plate		92	Wnt9a Efcc1 Glis3 Pcp4l1 Sntb1 Flnc	Expresses Wnt1;
RglDERP2	273	Radial glia	Diencephalic roof plate		79	Calml4 Wnt1 Slc39a12 Pcp4l1 Naaa Kcna5	Expresses Wnt1;
HypenSCO	274	Subcommissural organ	Subcommissural organ hypendymal cell		116	Spdef Sspo Ferd3l Spp2 Npsr1 Armc4	See auto-annotation
OEC1	275	Olfactory ensheathing cell	Olfactory ensheathing cell		68	Prss56 Srpx Plp1 Zpld1 Cntn3 Fmo1	See auto-annotation
OEC2	276	Olfactory ensheathing cell	Olfactory ensheathing cell		114	Prss56 A330076C08Rik Bricd5 Zpld1 0610040J01Rik Afap1l2	See auto-annotation
OEC3	277	Olfactory ensheathing cell	Olfactory ensheathing cell		29	Prss56 Esyt3 Plp1 Cmtm5 Kctd12 Afap1l2	See auto-annotation
OEC4	278	Olfactory ensheathing cell	Olfactory ensheathing cell		75	Matn4 Gm34838 Plp1 Gm4632 Sntb1 Afap1l2	with other OEC on t-SNE
Schw1	279	Schwann cell	Schwann cell		123	Prss56 Gpr37 Ntn5 Aldh1a7 Slc36a2 Alox12	See auto-annotation
Schw2	280	Schwann cell	Schwann cell		374	Mpz Dhrs2 Mal Art3 Plekha4 Ahr	See auto-annotation
Schw3	281	Schwann cell	Schwann cell		129	Sfrp5 Catsperz Egfl8 Cmtm5 Olfml2a Abca8a	See auto-annotation
GblM1	282	Glioblast	Midbrain		237	Tnc Gm26604 Fzd10 Lxn Hs3st3b1 Bcl2	See tissue distribution
GblM2	283	Glioblast	Midbrain		739	Tnc Chrna3 Luzp2 Cldn10 Baalc Gabbr2	See tissue distribution
GblM3	284	Glioblast	Midbrain		267	Shisa3 Aldh1l1 Fgfbp3 Lxn Rassf10 Adhfe1	See tissue distribution
GblF8	285	Glioblast	Forebrain		275	Slc14a2 Nlrx1 Cpm Creg2 Cfap100 Adhfe1	See tissue distribution
GblF9	286	Glioblast	Forebrain		120	Slc14a2 Bdh2 Cpm Trim47 Paqr8 Shc3	See tissue distribution
GblF10	287	Glioblast	Forebrain		395	Mlc1 Dapk2 Dkk3 Cmtm5 Pacrg Tspan15	See tissue distribution
GblF11	288	Glioblast	Forebrain		273	Mlc1 Igsf1 Gm17455 Enkur Gm11992 Traf1	See tissue distribution
GblF12	289	Glioblast	Forebrain		283	Clu Cln3 Dbx2 Ramp1 Slc25a18 Tmem100	See tissue distribution
GblMix1	290	Glioblast	Mixed region		136	Aldoc N4bp2l1 Slc7a10 Gdpd2 Slc25a18 Cnp	See tissue distribution
GblH1	291	Glioblast	Hindbrain		561	Aldoc Fam69c Fgfbp3 Emp2 Slc25a18 Paqr7	See tissue distribution
GblH2	292	Glioblast	Hindbrain		405	Slc6a11 Rrnad1 Slc7a10 Emp2 Slc6a9 Paqr7	See tissue distribution
GblH3	293	Glioblast	Hindbrain		165	Aqp4 Tmbim1 Ppp1r3c Ramp1 Prss35 Tmem100	See tissue distribution
GblH4	294	Glioblast	Hindbrain		267	Nppc 1110032F04Rik Hopx Gabrb1 Grm7 Paqr7	See tissue distribution
GblH5	295	Glioblast	Hindbrain		293	Nppc Dnah6 Angptl1 Gabrb1 Naaa Dnaaf3	See tissue distribution
GblH6	296	Glioblast	Hindbrain		195	Nppc Cyp39a1 Nid1 Ednrb Naaa Afap1l2	See tissue distribution
GblH7	297	Glioblast	Hindbrain		248	Pgm5 Sostdc1 Luzp2 Gabrb1 Dhrs3 Acot1	See tissue distribution
AstroMix1	298	Glioblast	Mixed region astrocytes		164	Aqp4 Lypd1 Hopx Inpp5j Tmie Selenom	Expresses high levels of Aqp4, Gfap
AstroMix2	299	Glioblast	Mixed region astrocytes		528	Gfap Pla2g3 Hopx Sparcl1 Cidea Adhfe1	Expresses high levels of Aqp4, Gfap
AstroMix3	300	Glioblast	Mixed region astrocytes		309	Slc6a11 Mcrip2 Dbx2 Fam212b Slc6a9 Etv4	Expresses high levels of Agt
AstroMix4	301	Glioblast	Mixed region astrocytes		1064	Slc6a11 Trim62 Dbx2 Cldn10 Slc6a9 Atp1a2	Expresses high levels of Agt
AstroMix5	302	Glioblast	Mixed region astrocytes		451	Agt Il33 Slc7a10 Cldn10 Slc6a9 Cyp2j9	Expresses high levels of Agt
AstroH	303	Glioblast	Hindbrain		554	Pla2g7 AI464131 Adamtsl1 Cldn10 Slc6a9 Cyp2j9	See tissue distribution
AstroSC1	304	Glioblast	Spinal cord		92	Ctnna3 Lcat Hopx Cldn10 Slc6a9 Atp1a2	Expresses Hoxb8
AstroSC2	305	Glioblast	Spinal cord		104	Ctnna3 Kcnmb4os2 Hopx Creg2 Kcnmb4 Adhfe1	Expresses Hoxb8
PreOPC1	306	Glioblast	PreOPC		225	Ntsr2 Gm29683 Dbx2 Fzd9 Mfge8 March3	Adjacent to 306 on t-SNE
PreOPC2	307	Glioblast	PreOPC		608	Olig1 Stard9 Olig2 Crlf1 Sox8 Me3	Rgl2c auto-annotation
PreOPC3	308	Glioblast	PreOPC		113	Olig1 Gm35040 Olig2 Crlf1 Cbr3 Ttpa	Adjacent to 306 on t-SNE; Olig1/Olig2 enriched
GblO1	309	Glioblast	Mixed region		852	Olig1 Cdc42ep1 Olig2 Fam212b Cbr3 Etv4	See tissue distribution
GblO2	310	Glioblast	Mixed region		723	Timp4 Cenpi Acsbg1 Ramp1 Cbr3 Etv4	See tissue distribution
OPC1	311	Glioblast	Undefined		20	Olig1 Caskin2 Lhfpl3 Lnx1 Dock10 Plekhb1	Doublets? Relatively high score, OPC and @AEP auto-annotation
OPC2	312	Oligodendrocyte	Undefined		15	Olig1 Gfod1 Olig2 Pdgfra Xylt1 Me3	Doublets? @GABA auto-annotation
OPC3	313	Oligodendrocyte	Oligodendrocyte precursor cell		237	Gpr17 Cdkn2c Olig2 Pdgfra Cspg4 Omg	See auto-annotation
OPC4	314	Oligodendrocyte	Oligodendrocyte precursor cell		302	Matn4 Sstr1 Lhfpl3 Pdgfra Cspg4 Omg	See auto-annotation
OPC5	315	Oligodendrocyte	Oligodendrocyte precursor cell		922	Scrg1 Col19a1 Lhfpl3 Pdgfra Cspg4 Omg	See auto-annotation
OPC6	316	Oligodendrocyte	Oligodendrocyte precursor cell		241	Olig1 Tmem255b Pllp Pdgfra A930009A15Rik Omg	See auto-annotation
OPC7	317	Oligodendrocyte	Oligodendrocyte precursor cell		288	Olig1 Rph3a Olig2 Prkcq A930009A15Rik Omg	See auto-annotation
COP1	318	Oligodendrocyte	Committed oligodendrocyte precursor		84	Gpr17 Amz1 Lims2 Tnr Gpr37l1 Neu4	See auto-annotation
COP2	319	Oligodendrocyte	Committed oligodendrocyte precursor		78	Enpp6 Mro Mbp 9630013A20Rik Fa2h Cnp	See auto-annotation
Oligo	320	Oligodendrocyte	Oligodendrocyte		36	Enpp6 Gjc3 Mbp Mag Ugt8a Plxnb3	See auto-annotation
NblM1	321	Neuroblast	Midbrain GABAergic		342	Tal2 Gpr137c Pnoc Cacna2d3 Clvs2 Tenm3	See tissue distribution, auto-annotation
NblM2	322	Neuroblast	Midbrain GABAergic		551	Tal2 Gm10605 Pnoc Otx1 Clvs2 Nav2	See tissue distribution, auto-annotation
NblM3	323	Neuroblast	Midbrain	Midbrain alar ventrolateral plate (m1AVL)	132	Tal2 Fam214a Nrtn Stk33 Tmem38b Nav2	See tissue distribution
NblM4	324	Neuroblast	Midbrain		57	Tal2 Bcas1 Ascl1 Sdk2 Tmem38b Tenm3	See tissue distribution
NblF1	325	Neuroblast	Forebrain glutamatergic	Sparse PHy	58	Isl1 Pkib Cdh7 3632451O06Rik Cdkn1c Syt1	See tissue distribution, auto-annotation
NblF2	326	Neuroblast	Forebrain		573	Dlk1 Crb1 G0s2 Zc3h12c Btg2 Srrm4	See tissue distribution
NblF3	327	Neuroblast	Forebrain GABAergic		217	Gsx1 Crb1 St18 Stk33 Pak3 Peg3	See tissue distribution, auto-annotation. Expresses Gabaergic Dlxs
NblF4	328	Neuroblast	Forebrain GABAergic		398	Dlx1 Smox Dlx5 Stk33 Myt1 Dclk2	See tissue distribution, auto-annotation. Expresses Gabaergic Dlxs
NblF5	329	Neuroblast	Forebrain GABAergic		176	Gsx1 Rgs8 D030055H07Rik Stk33 Cdkn1c Dcc	See tissue distribution, auto-annotation. Expresses Gabaergic Dlxs
NblF6	330	Neuroblast	Forebrain GABAergic	Mantle zone of preoptic area and subpallium, diffuse first branchail arch	79	Sp9 Arid3a Dlx5 Kcnh2 Phf21b Fbrsl1	See tissue distribution, auto-annotation
CR1	331	Neuroblast	Cajal-Retzius		37	Mcidas 1600014C10Rik Ccno Cav2 Pidd1 Lrriq1	See auto-annotation
CR2	332	Neuroblast	Cajal-Retzius		124	Mcidas Dmrta2os Ccno Cav2 Agbl4 Lrriq1	See auto-annotation
CR3	333	Neuroblast	Cajal-Retzius		28	Mcidas Insm2 Ccno E2f7 Myb Stox1	See auto-annotation
NblMN1	334	Neuroblast	Motor neuron	Hinbrain r4 ventral	161	Phox2a Rpusd3 Ppp1r17 Fam163a Snx18 Gamt	See auto-annotation
NblMN2	335	Neuroblast	Motor neuron	Hindbrain and spinal cord ventral	107	Phox2a Halr1 Nkx6-1 Kcnh2 Nhs Trim9	See auto-annotation
NblM5	336	Neuroblast	Midbrain	Midbrain roof plate, subpallium ganglionic eminence	177	Neurog1 Wnt10a Onecut2 Prdm12 Col16a1 Tnnt1	See tissue distribution
NblM6	337	Neuroblast	Midbrain	Failed spatial mapping	125	Cck Ccdc182 Plk3 Sapcd1 A330009N23Rik Jag1	See tissue distribution
NblM7	338	Neuroblast	Midbrain	Midbrain diencephalon roof plate	154	Neurog1 Nhej1 Onecut2 Tmem159 Sgpp2 Tnnt1	See tissue distribution
NblMix2	339	Neuroblast	Mixed region	Failed spatial mapping	343	Neurog1 Fndc3c1 Glra1 Cdc25b Spsb4 5730559C18Rik	See tissue distribution
NblH1	340	Neuroblast	Hindbrain	Hindbrain dorsal (alar)	244	Atoh1 Ccdc182 Wnt3a Iqck Nkd1 Gprc5b	See tissue distribution
NblH2	341	Neuroblast	Hindbrain	Hindbrain ventral (basal)	184	Vsx1 Wdr66 Mybl1 Cdh20 Slc35d2 Crybg3	See tissue distribution
NblMix3	342	Neuroblast	Mixed region	Failed spatial mapping	45	Vsx1 Eya2 Alpl Hspa2 C330027C09Rik Notch1	See tissue distribution
NblH3	343	Neuroblast	Hindbrain	Failed spatial mapping	153	Hes2 4930557F10Rik Alpl Hspa2 Rsph1 Kif18a	See tissue distribution
NblM7	344	Neuroblast	Midbrain		773	Dbx1 Pkib Rassf4 Sdk2 Nuak2 Dcc	See tissue distribution
NblM8	345	Neuroblast	Midbrain		228	Helt Pkib Gadd45g Otx2 Nuak2 Dlgap5	See tissue distribution
NblM9	346	Neuroblast	Midbrain	Midbrain basal plate	91	Helt Foxa2 Nkx6-1 Cdc25b Spsb4 Heg1	See tissue distribution
NblM10	347	Neuroblast	Midbrain	Diencephalon basal plate	148	9030622O22Rik Pik3c2b Btbd17 Sulf1 Spsb4 Heg1	See tissue distribution
NblH4	348	Neuroblast	Hindbrain	Hindbrain and spinal cord ventral (basal)	111	Neurog1 Lsp1 Plk3 Gfra1 Numbl Cog1	See tissue distribution
NblMix4	349	Neuroblast	Mixed region	Failed spatial mapping	196	Neurog1 Gm20083 Plk3 Galnt18 Phldb2 Crybg3	See tissue distribution
NblH5	350	Neuroblast	Hindbrain	Hindbrain and spinal cord ventral (basal)	115	Neurog1 Cxcl14 Glra1 Pgpep1 Spsb4 Iqgap2	See tissue distribution
NblH6	351	Neuroblast	Hindbrain	Hindbrain and spinal cord dorsolateral	129	Msx3 Gm12236 Glra1 Sapcd1 Txlnb Nckap5	See tissue distribution
NblH7	352	Neuroblast	Hindbrain	Hindbrain and spinal cord dorsolateral	156	Ptf1a Akr1b8 Nphs1 Cdc25b Spsb4 Gprc5b	See tissue distribution
NblH8	353	Neuroblast	Hindbrain	Medulla dorsolateral	177	Kirrel2 Prdm13 Nphs1 Wnt5a Rgs3 Gprc5b	See tissue distribution
NblH9	354	Neuroblast	Hindbrain		225	Msx3 Zfp37 Glra1 Miat Chrna4 Adgrg1	See tissue distribution
NblF7	355	Neuroblast	Forebrain		95	Gm29478 Rgs13 AC154683.1 Clybl Wscd1 Dcc	See tissue distribution
NblMix5	356	Neuroblast	Mixed region		142	Neurog2 Rgs13 Grasp Zc3h12c Nuak2 Tmem2	See tissue distribution
NblF8	357	Neuroblast	Forebrain		179	Olig3 Brip1 Prkg2 Zc3h12c E2f1 Eml5	See tissue distribution
NblF9	358	Neuroblast	Forebrain glutamatergic	Pallium dorsal lateral	71	Neurog1 Mamld1 Kifc1 Sapcd2 Ube2c Ccnb1	See tissue distribution, auto-annotation
NblF10	359	Neuroblast	Forebrain glutamatergic		220	Gmnc Dll1 Rspo3 Fam110a Hes6 Lzts1	See tissue distribution, auto-annotation
NblF11	360	Neuroblast	Forebrain glutamatergic		33	Neurog1 Hs3st3a1 Gadd45g Zc3h12c Btg2 Lzts1	See tissue distribution, auto-annotation
NblH10	361	Neuroblast	Hindbrain		172	Gata2 Insm2 Fam183b Gm4675 Rsph1 Pcdh17	See tissue distribution, auto-annotation
NblMix6	362	Neuroblast	Mixed region	Hindbrain and spinal cord ventral	50	3110035E14Rik 2610008E11Rik St18 Sdk2 Sdccag8 Vat1l	See tissue distribution, auto-annotation
NblH11	363	Neuroblast	Hindbrain	Failed spatial mapping	159	Vsx2 Insc Nkx6-1 Gm4675 Sox21 Rnd3	See tissue distribution, auto-annotation
NblMix7	364	Neuroblast	Mixed region glutamatergic	Lateral preoptic area	127	Sim1 S100a16 Mfng Clvs1 Cacna2d1 Serping1	See tissue distribution, auto-annotation
NblM11	365	Neuroblast	Midbrain glutamatergic	Midbrain vetral, lateral preoptic area	169	Sim1 Insm1 2700046A07Rik Clvs1 Myo16 Elavl4	See tissue distribution, auto-annotation
NblM12	366	Neuroblast	Midbrain glutamatergic	Ventral diencephalon	142	9030622O22Rik Hepacam2 Tmem163 Pxylp1 Apcdd1 Chn2	See tissue distribution, auto-annotation
NblH12	367	Neuroblast	Hindbrain	Ventral hindbrain	46	Phox2b Bcas1 Crabp1 Lmx1b Chrna4 Adgrg1	See tissue distribution
NblH13	368	Neuroblast	Hindbrain	Hindbrain lateral r4	67	Tlx3 Nexn Crabp1 Sapcd1 Chrna4 Gamt	See tissue distribution
NblH14	369	Neuroblast	Hindbrain	Hindbrain lateral	174	Otp Insc Lhx5 Gfra1 Csrp1 Serping1	See tissue distribution
NblH15	370	Neuroblast	Hindbrain glycinergic	Hindbrain ventrolateral	120	Gm20649 Qsox1 Crabp1 Hoxb2 Chrna4 Greb1l	See tissue distribution, auto-annotation
NblM13	371	Neuroblast	Midbrain	Midbrain dorsal, hindbrain lateral	132	Dbx1 Grm4 Onecut2 A830018L16Rik A330009N23Rik Gamt	See tissue distribution
NblH16	372	Neuroblast	Hindbrain	Failed spatial mapping	238	Atoh1 Cdkn2b Rassf4 Gm16701 1700003F12Rik Fam78b	See tissue distribution
NblH17	373	Neuroblast	Hindbrain	Hindbrain dorsal	159	Atoh1 Stpg1 Rassf4 Rab15 Nkd1 Mtcl1	See tissue distribution
NblF12	374	Neuroblast	Forebrain	Subpallium lateral	95	Atp8b4 Kif19a Art1 Art5 Ankrd2 Fam107a	See tissue distribution; could be olfactory sensory neurons based on Lhx2, Fezf1, Uncx, Krt8
NblSN1	375	Neuroblast	Sensory neuron	Cranial ganglion	125	Ppp1r14a Ccdc88b Six1 Bdnf A330009N23Rik Dcdc2a	See tissue distribution; Expresses Tlx2, Six1; could be vestibulo-acoustic ganglion based on Fgf10 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6772592/), Fbxo2 (doi: 10.3389/fncel.2015.00079), Gata3 and Bhlhe22 (doi: 10.1523/JNEUROSCI.4703-12.2013)
NblSN2	376	Neuroblast	Sensory neuron	Cranial ganglion	109	Tlx2 Fanca Synpo Mreg Gm35696 Coro2a	See tissue distribution; Expresses Tlx2, Six2
NblSN3	377	Neuroblast	Sensory neuron	Cranial ganglion	232	Sct Bik Tuba4a Mreg Atp6v1c2 Egflam	See tissue distribution; Expresses Tlx2, Six3; could be trigeminal based on Otx2, Prrxl1, Prdm12 (doi: 10.1186/s13064-016-0057-y)
NblSN4	378	Undefined	Sensory neuron	Failed spatial mapping	169	Tlx2 Kif2c Dpysl4 Mreg Tpm2 Gamt	No markers on heatmap
NblSN5	379	Neuroblast	Sensory neuron	Ventrolateral spinal cord	43	Tlx2 D930020B18Rik Gm7271 Mreg Acad10 Serpinb8	See tissue distribution; Expresses Tlx2, Six3; could be trigeminal based on Otx2, Prrxl1, Prdm12 (doi: 10.1186/s13064-016-0057-y)
NblSN6	380	Neuroblast	Sensory neuron	Cranial ganglion	92	Tlx2 Gm4166 Gm7271 Mreg Gm16104 Coro2a	See tissue distribution; Expresses Tlx2, Six3; could be trigeminal based on Otx2, Prrxl1, Prdm12 (doi: 10.1186/s13064-016-0057-y)
NblSN7	381	Neuroblast	Sensory neuron	Cranial ganglion	97	Isl2 Ccer2 Synpo Mreg Cerkl Cryba1	See tissue distribution; Expresses Tlx2, Six3; could be trigeminal or acoustic based on Fgf10 https://doi.org/10.1371/journal.pone.0030677
NblSN8	382	Neuroblast	Sensory neuron	Cranial ganglion	23	Tlx2 Prox2 Gm7271 Dbh Cerkl Tspan2os	See tissue distribution; Expresses Tlx2, Six3; could be epibranchial based on Phox2a, Prox2, Ret (https://www.jneurosci.org/content/16/23/7649)
Nbl383	383	Neuroblast	Hindbrain	Failed spatial mapping	11	Lhx4 St8sia3os Ppp1r17 Frmpd1 Parm1 Angpt2	See tissue distribution
Nbl384	384	Neuroblast	Motor neuron	Ventral hindbrain	103	Gnat3 Insc Tbx20 Fam163a Prickle1 Mcc	See tissue distribution, auto-annotation
Nbl385	385	Neuroblast	Motor neuron	Ventral hindbrain, spinal cord	22	Lhx4 Sema3d Tbx20 Pnlip Arhgap36 Kcnab1	See tissue distribution, auto-annotation
Nbl386	386	Neuroblast	Midbrain glutamatergic	Failed spatial mapping	157	Cplx3 Prss12 Onecut2 Prdm12 Npr2 Gamt	See tissue distribution, auto-annotation
Nbl387	387	Neuroblast	Midbrain glutamatergic	Midbrain	197	Onecut3 E130006D01Rik Onecut2 Tppp3 Hspa12a Rem2	See tissue distribution, auto-annotation
Nbl388	388	Neuroblast	Midbrain glutamatergic	Midbrain	203	Bhlhe23 Cpne8 Onecut2 Tppp3 Esyt1 Crip1	See tissue distribution, auto-annotation
Nbl389	389	Neuroblast	Sensory neuron	Cranial ganglion (trigeminal)	162	Isl2 Pappa2 Ppp1r17 Scn9a S100a10 Crip1	See auto-annotation
Nbl390	390	Neuroblast	Midbrain glutamatergic	Failed spatial mapping	138	Pitx2 Lypd1 Gm28526 Lef1 Bmp7 Enpp2	See tissue distribution, auto-annotation
Nbl391	391	Neuroblast	Midbrain glutamatergic	Failed spatial mapping	57	Gm26872 Shisa6 Gm28526 3632451O06Rik Dock5 Rap1gap2	See tissue distribution, auto-annotation
Nbl392	392	Neuroblast	Midbrain glutamatergic	Failed spatial mapping	221	Gm26872 Enpp3 Ppp1r17 3632451O06Rik Dock5 Rap1gap2	See tissue distribution, auto-annotation
Nbl393	393	Neuroblast	Hindbrain glutamatergic		267	C1ql4 Chrdl1 Evx2 Nrn1 Lrrtm3 Trp53i11	See tissue distribution, auto-annotation
Nbl394	394	Neuroblast	Hindbrain glutamatergic		483	Robo3 Cpsf7 Nefl Hoxb2 Rgmb Ina	See tissue distribution, auto-annotation
Nbl395	395	Neuroblast	Hindbrain glutamatergic		254	Evx1os Il17ra Adcyap1 Gm16701 Rgmb Fam78b	See tissue distribution, auto-annotation
Nbl396	396	Neuroblast	Hindbrain glutamatergic	Hindbrain r4	59	Grem2 Hoxc5 Hoxb4 3632451O06Rik Hoxd3 Fam78b	See tissue distribution, auto-annotation
Nbl397	397	Neuroblast	Hindbrain glutamatergic		71	Phox2b 9330182L06Rik Nefm Lmx1b Slc17a6 Gcnt2	See tissue distribution, auto-annotation
Nbl398	398	Neuroblast	Hindbrain glutamatergic	Hindbrain	103	Phox2b Gm49144 Nefm Lmx1b Nkain4 Rara	See tissue distribution, auto-annotation
Nbl399	399	Neuroblast	Hindbrain glutamatergic	Strong staining of unknown caudal structure	155	Nrgn Tlx1 C130021I20Rik Lmx1b Peg10 Racgap1	See tissue distribution, auto-annotation
Nbl400	400	Neuroblast	Hindbrain glutamatergic		267	Tlx3 Gm44593 C130021I20Rik Lmx1b Cblb Garem2	See tissue distribution, auto-annotation
Nbl401	401	Neuroblast	Spinal cord glutamatergic		262	Hoxb6 Klhl35 Hoxb4 Lmx1b Rgmb Slc8a2	Hoxb8, auto-annotation
Nbl402	402	Neuroblast	Hindbrain GABAergic		287	Robo3 Gal3st3 Gm26688 Pid1 Rgmb Fam43a	See tissue distribution, auto-annotation
Nbl403	403	Neuroblast	Hindbrain GABAergic		227	Tfap2a Adra1a Nkain1 Igsf8 Rgs3 Lzts1	See tissue distribution, auto-annotation
Nbl404	404	Neuroblast	Hindbrain glycinergic		259	Robo3 Tcf15 Hoxb4 Igsf8 Tspan18 Srrm3	See tissue distribution, auto-annotation
Nbl405	405	Neuroblast	Hindbrain glycinergic		297	Robo3 Sema4b Hoxb4 Mxra7 Rcan2 Rara	See tissue distribution, auto-annotation
Nbl406	406	Neuroblast	Hindbrain glycinergic		115	Slc6a5 Homer2 Lhx5 Scrt2 Rcan2 Slc37a1	See tissue distribution, auto-annotation
Nbl407	407	Neuroblast	Hindbrain glycinergic		291	Otp Klhl35 Lhx5 Gfra1 Enox2 Rnd3	See tissue distribution, auto-annotation
Nbl408	408	Neuroblast	Hindbrain glycinergic	Ventrolateral hindbrain, spinal cord	319	Otp Dnajb5 Lhx1os Gfra1 Rgmb Tmem169	See tissue distribution, auto-annotation
Nbl409	409	Neuroblast	Hindbrain GABAergic	Lateral hindbrain, spinal cord	98	Otp 2610027F03Rik Lhx1os Syndig1 Enox2 Klhl32	See tissue distribution, auto-annotation
Nbl410	410	Neuroblast	Midbrain		184	Cplx3 Gm44593 Gm26688 Mab21l1 Pou3f4 Lzts1	See tissue distribution
Nbl411	411	Neuroblast	Midbrain		195	Shox2 Crebrf Prmt8 Ebf3 2510009E07Rik Dcc	See tissue distribution
Nbl412	412	Neuroblast	Midbrain glutamatergic		249	Shox2 Tspan11 Ebf2 Gfra1 Cdkn1c Efna5	See tissue distribution, auto-annotation
Nbl413	413	Neuroblast	Midbrain glutamatergic		373	Bhlhe23 Thrb Pou4f1 Cntn2 Fbxl17 F13a1	See tissue distribution, auto-annotation
Nbl414	414	Neuroblast	Midbrain glutamatergic		63	D130079A08Rik Abcd2 Barhl2 Mab21l1 Fzd1 Klhl13	See tissue distribution, auto-annotation
Nbl415	415	Neuroblast	Midbrain glutamatergic		628	Bhlhe23 Kcnip3 Onecut2 Vav3 Fzd1 Srrm3	See tissue distribution, auto-annotation
Nbl416	416	Neuroblast	Midbrain glutamatergic		23	Gm26872 Pax5 Barhl2 Gfra1 5930412G12Rik Parvb	See tissue distribution, auto-annotation
Nbl417	417	Neuroblast	Midbrain glutamatergic		1094	Pou4f3 Lhx9 Pou4f1 Mab21l1 Gpr156 Igfbpl1	See tissue distribution, auto-annotation
Nbl418	418	Neuroblast	Midbrain glutamatergic		316	Asic2 Ypel2 Adcyap1 Cntn2 Chgb Klhl13	See tissue distribution, auto-annotation
Nbl419	419	Neuroblast	Midbrain glutamatergic		386	Tfap2b Sertad4 Lgals7 Mab21l1 Rtn4rl1 F13a1	See tissue distribution, auto-annotation
Nbl420	420	Neuroblast	Midbrain glutamatergic		730	Tfap2b Foxb1 Lgals7 Ntng2 Pcsk2 Cntnap2	See tissue distribution, auto-annotation
Nbl421	421	Neuroblast	Thalamus glutamatergic		205	Gbx2 Nme2 Zic5 Dmrtb1 Slc17a6 Rhou	See tissue distribution, auto-annotation
Nbl422	422	Neuroblast	Thalamus glutamatergic		235	Gbx2 Mapk11 Sema5a Pou2f2 Rnf220 Fam78b	See tissue distribution, auto-annotation
Nbl423	423	Neuroblast	Thalamus glutamatergic		198	Gbx2 Wscd2 Prkg2 Slc1a2 Slc17a6 Cep112	See tissue distribution, auto-annotation
Nbl424	424	Neuroblast	Thalamus glutamatergic		165	Gbx2 Map3k20 Prkg2 Rtkn2 Arhgap18 Cdo1	See tissue distribution, auto-annotation
Nbl425	425	Neuroblast	Neuronal intermediate progenitor		11	2600014E21Rik Lockd Palmd Zhx2 Pou3f3 Rasgef1b	See tissue distribution, auto-annotation
Nbl426	426	Neuroblast	Forebrain glutamatergic		493	Unc5d Gm20687 Kcnn3 Foxg1 Nrp1 Cttnbp2	See tissue distribution, auto-annotation
Nbl427	427	Neuroblast	Forebrain glutamatergic		1242	Unc5d Focad Cdh10 Galnt17 Nrg1 Cttnbp2	See tissue distribution, auto-annotation
Nbl428	428	Neuroblast	Neuronal intermediate progenitor		1345	Eomes Stk32a Cdh8 Plcb1 Nrg1 Carmil3	See tissue distribution, auto-annotation
Nbl429	429	Neuroblast	Forebrain glutamatergic		293	Gm28050 Hs3st1 Sorl1 Negr1 Tmem108 Pam	See tissue distribution, auto-annotation
Nbl430	430	Neuroblast	Neuronal intermediate progenitor		174	Nhlh1 Sirt5 Dubr Necab3 Prdm8 Nfia	See tissue distribution, auto-annotation
Nbl431	431	Neuroblast	Forebrain glutamatergic		287	Tbr1 Tbk1 Cabp1 Rnd2 Prdm8 Ccser1	See tissue distribution, auto-annotation
Nbl432	432	Neuroblast	Forebrain glutamatergic		1936	Tiam2 Adamtsl3 Neurod6 Rnd2 Zbtb18 E330009J07Rik	See tissue distribution, auto-annotation
Nbl433	433	Neuroblast	Neuronal intermediate progenitor		629	Eomes Ttc39b Plcxd2 Mfap4 Sez6 Kif21b	See tissue distribution, auto-annotation
Nbl434	434	Neuroblast	Neuronal intermediate progenitor		1184	Sstr2 A930024E05Rik Neurod6 Slc30a10 Ulk4 Carmil3	See tissue distribution, auto-annotation
Nbl435	435	Neuroblast	Forebrain glutamatergic		20	Sstr2 4930545L23Rik Plcxd2 Flrt1 Ttbk1 Slc44a5	See tissue distribution, auto-annotation
Nbl436	436	Neuroblast	Neuronal intermediate progenitor		499	Eomes Rftn2 Ust Kif26b Nrg1 Snhg18	See tissue distribution, auto-annotation
Nbl437	437	Neuroblast	Neuronal intermediate progenitor		1036	Eomes Cdc14a Rhbdl3 Kif26b Celsr1 E330009J07Rik	See tissue distribution, auto-annotation
Nbl438	438	Neuroblast	Neuronal intermediate progenitor		475	Neurog2 Slc16a14 Rhbdl3 Lypd6 Celsr1 Lpar1	See tissue distribution, auto-annotation
Nbl439	439	Neuroblast	Neuronal intermediate progenitor		453	Neurog2 Dleu7 Rhbdl3 Tmem132b Celsr1 Fam210b	See tissue distribution, auto-annotation
Nbl440	440	Neuroblast	Neuronal intermediate progenitor		446	Neurog1 Lrrc1 Gadd45g Zc3h12c E2f1 Clspn	See tissue distribution, auto-annotation
Nbl441	441	Neuroblast	Neuronal intermediate progenitor		484	Eomes Ncapg2 Neil3 Tcf19 Hist1h2ae Esco2	See tissue distribution, auto-annotation
Nbl442	442	Neuroblast	Neuronal intermediate progenitor		261	Eomes Depdc1b Pif1 Mxd3 Spc25 Knl1	See tissue distribution, auto-annotation
Nbl443	443	Neuroblast	Neuronal intermediate progenitor		643	Eomes Hyls1 Gadd45g Troap Arhgap11a Cenpe	See tissue distribution, auto-annotation
Nbl444	444	Neuroblast	Neuronal intermediate progenitor		204	Eomes Fopnl Hist1h2bc Rnd2 Ube2c Cenpa	See tissue distribution, auto-annotation
Nbl445	445	Neuroblast	Neuronal intermediate progenitor		266	Eomes Rab39b Rwdd3 Clvs1 Rbfox3 Lzts1	See tissue distribution, auto-annotation
Nbl446	446	Neuroblast	Neuronal intermediate progenitor		327	Eomes Sat2 Gm11266 Mfap4 Gsap Nfia	See tissue distribution, auto-annotation
Nbl447	447	Neuroblast	Neuronal intermediate progenitor		180	Nhlh1 9630028B13Rik Dmrta1 Gadd45a Efna3 Pgap1	See tissue distribution, auto-annotation
Nbl448	448	Neuroblast	Undefined		12	Sstr2 Rbm24 Cdc25c Nfic Ttk Espl1	Doublets? Relatively high score
Nbl449	449	Neuroblast	Forebrain GABAergic	Subpallium	324	Gsx2 Rgs8 Rgs16 Depdc7 Hes6 Myo10	See auto-annotation, tissue distribution
Nbl450	450	Neuroblast	Forebrain GABAergic		209	Gsx2 Dusp10 Ascl1 Stk33 E2f1 Ccne2	See auto-annotation, tissue distribution
Nbl451	451	Neuroblast	Forebrain GABAergic		305	Dlx2 E2f2 Rbm3 Uba52 Ccnd2 Slbp	See auto-annotation, tissue distribution
Nbl452	452	Neuroblast	Forebrain GABAergic		1009	Dlx2 Rbl1 Arx Rffl Gm10282 Atad2	See auto-annotation, tissue distribution
Nbl453	453	Neuroblast	Forebrain		192	Gsx2 Egfr Ascl1 Lima1 Efhd2 Rnf180	See tissue distribution
Nbl454	454	Neuroblast	Forebrain GABAergic		370	Dlx6os1 Tmem98 Arx Zswim5 Grik3 Dclk2	See auto-annotation, tissue distribution
Nbl455	455	Neuroblast	Forebrain GABAergic		566	Dlx6os1 Arhgef39 Dlx5 Cep55 Aspm Sgo2a	See auto-annotation, tissue distribution
Nbl456	456	Neuroblast	Forebrain GABAergic		610	Gsx2 Gpbp1l1 Dlx5 Stk33 Aspm Pbk	See auto-annotation, tissue distribution
Nbl457	457	Neuroblast	Forebrain GABAergic		736	Dlx6os1 Sall1 Dlx5 Gm13889 Ccnd2 Nusap1	See auto-annotation, tissue distribution
Nbl458	458	Neuroblast	Forebrain GABAergic		1053	B020031H02Rik Arl4d Dlx5 Gm13889 Ccnd2 Gm14964	See auto-annotation, tissue distribution
Nbl459	459	Neuroblast	Hindbrain		29	Prelp Dll3 Gadd45g Sdk2 Rbfox3 Rnasel	See tissue distribution
Nbl460	460	Neuroblast	Hindbrain		122	Msx3 Adcy2 Glra1 Pdpn Nrarp Sema5b	See tissue distribution; cerebellar progenitor auto-annotation
Nbl461	461	Neuroblast	Hindbrain		91	Kirrel2 Sh3bp4 Nphs1 Pgpep1 Hes6 Chst15	See tissue distribution; cerebellar progenitor auto-annotation
Nbl462	462	Neuroblast	Hindbrain		111	Ptf1a Adgrg6 Nphs1 Hhip Grid2 Meis1	See tissue distribution; cerebellar progenitor auto-annotation
Nbl463	463	Neuroblast	Hindbrain		164	Ptf1a Ass1 Nphs1 Col28a1 Grid2 Mgst1	See tissue distribution; cerebellar progenitor auto-annotation
Nbl464	464	Neuroblast	Hindbrain		11	Kirrel2 Ncdn Prss23 Nbl1 Wscd1 Vps37b	See tissue distribution; cerebellar progenitor auto-annotation
Nbl465	465	Neuroblast	Hindbrain glycinergic		244	Pax2 Pde3a Slc30a3 Abat Kcnb2 Afap1	See tissue distribution, auto-annotation
Nbl466	466	Neuroblast	Hindbrain glycinergic		90	Pax2 Olfml2b Gm38399 Tbc1d4 Masp1 Nanos1	See tissue distribution, auto-annotation
Nbl467	467	Neuroblast	Hindbrain glycinergic		39	Optc Ccna1 Gm38399 Mxd3 Aspm Hmmr	See tissue distribution, auto-annotation
Nbl468	468	Neuroblast	Undefined		72	Kcnj6 Setd7 AC154683.1 Ryr2 Sez6l Gm20696	Doublets? High doublet score
Nbl469	469	Neuroblast	Mixed region		323	Hs3st5 Rprd1b AC154683.1 Pde1c Carnmt1 Nav2	See tissue distribution
Nbl470	470	Neuroblast	Mixed region glutamatergic		231	Neurog2 Mccc2 Rhbdl3 Mdga1 Rbfox3 Nfia	See auto-annotation, tissue distribution
Nbl471	471	Neuroblast	Mixed region glutamatergic		22	Nhlh1 Pygo1 Reln Mdga1 Syn2 Nfia	See auto-annotation, tissue distribution
Nbl472	472	Neuroblast	Mixed region glutamatergic		28	Sim1 E130114P18Rik Nxph4 Zmat4 Shf Slc22a15	See auto-annotation, tissue distribution
Nbl473	473	Neuroblast	Hindbrain glutamatergic		127	Hoxc4 Wrnip1 Hoxb4 Tmem178 Fgf9 Ddx31	See auto-annotation, tissue distribution
Nbl474	474	Neuroblast	Hindbrain glutamatergic		381	Robo3 Sertm1 Hoxb3 Klhl1 Hoxd3 Elmo1	See auto-annotation, tissue distribution
Nbl475	475	Neuroblast	Hindbrain glutamatergic		278	Ren1 Tprn Hoxb3 Pde1c Eva1c Fam78b	See auto-annotation, tissue distribution
Nbl476	476	Neuroblast	Hindbrain glutamatergic		111	Atoh1 Arhgef10l Rassf4 Hsd11b2 Sema7a Fam78b	See auto-annotation, tissue distribution
Nbl477	477	Neuroblast	Hindbrain		99	Atoh1 Cyp11a1 Btbd11 Hsd11b2 Sema7a Fam78b	See tissue distribution
Nbl478	478	Neuroblast	Hindbrain		132	Atoh1 Gm38534 Btbd11 Hsd11b2 Nkd1 Dbndd2	See tissue distribution
Nbl479	479	Neuroblast	Hindbrain glutamatergic		86	Tlx3 Pmaip1 Gm12116 Tmem91 Gxylt2 Sept4	See auto-annotation, tissue distribution
Nbl480	480	Neuroblast	Hindbrain		104	Pcsk9 Gm26911 Ucma Mfap4 Man1c1 Gamt	See tissue distribution
Nbl481	481	Neuroblast	Hindbrain		414	Pcsk9 Focad A930017K11Rik Pde1c Lynx1 Sept4	See tissue distribution
Nbl482	482	Neuroblast	Hindbrain		243	Pcsk9 Tbata Ppp2r2c Cog7 Man1c1 Selenom	See tissue distribution
Nbl483	483	Neuroblast	Hindbrain		414	Cadps2 Pgf Ppp2r2c Pdgfc Man1c1 Selenom	See tissue distribution
Nbl484	484	Neuroblast	Hindbrain		666	Pvalb Ntf3 Gsg1l Gm5089 Kcne1l Sipa1l3	See tissue distribution
Nbl485	485	Neuroblast	Hindbrain		551	Tlx3 Grin2c Gm12116 Sp5 Kcne1l Kcnd3	See tissue distribution
Nbl486	486	Neuroblast	Hindbrain		569	Pvalb Fgfr4 Ucma C230057M02Rik Sema7a Sipa1l3	See tissue distribution
Nbl487	487	Neuroblast	Hindbrain glutamatergic		118	Pcsk9 Sema3a Sv2b Mxd3 Ppm1h Sgo2a	See auto-annotation, tissue distribution
Nbl488	488	Neuroblast	Hindbrain glutamatergic		188	Abca4 Gm15723 Barx2 Pax6 Igsf21 Gamt	See auto-annotation, tissue distribution
Nbl489	489	Neuroblast	Hindbrain		261	Atoh1 Cemip Gsg1l Gm5089 Man1c1 Vat1l	See tissue distribution
Nbl490	490	Neuroblast	Hindbrain glutamatergic		300	Mybpc1 1810041L15Rik Barx2 Gm5089 Mgarp Vat1l	See auto-annotation, tissue distribution
Nbl491	491	Neuroblast	Hindbrain glutamatergic		31	Nts Tph1 Barx2 Zfp804b Mgarp Slc24a3	See auto-annotation, tissue distribution
Neur492	492	Neuron	Cortical or hippocampal glutamatergic		235	Tac2 Emx1 Stxbp5l Nfix Cntnap4 Cttnbp2	See auto-annotation, tissue distribution; Expresses Prox1
Neur493	493	Neuron	Cortical or hippocampal glutamatergic		882	Grp Gm32647 Sln Mctp1 Rnf182 Camk2b	See auto-annotation, tissue distribution
Neur494	494	Neuron	Cortical or hippocampal glutamatergic		228	Calb2 Kcnip3 Kcnq3 Nfix Prdm8 Nuak1	See auto-annotation, tissue distribution
Neur495	495	Neuron	Cortical or hippocampal glutamatergic		150	Prox1 Rerg Col12a1 Kcnk1 Syt2 Neurod1	See auto-annotation, tissue distribution; Expresses Prox1
Neur496	496	Neuron	Cortical or hippocampal glutamatergic		469	Tbr1 Vash1 Lrfn5 Ntng2 Prdm8 Jph4	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur497	497	Neuron	Cortical or hippocampal glutamatergic		615	Bhlhe22 Gm38604 Slit3 Ntng2 Rprm Hivep2	See tissue distribution, auto-annotation
Neur498	498	Neuron	Cortical or hippocampal glutamatergic		484	Bhlhe22 Hdac4 Fam19a2 Gabra2 Zbtb18 Hivep2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur499	499	Neuron	Cortical or hippocampal glutamatergic		526	Fam19a1 Adamts3 Fam19a2 Epha3 Epha6 Syn3	See tissue distribution, auto-annotation
Neur500	500	Neuron	Cortical or hippocampal glutamatergic		415	Cdh12 Slc24a2 Kcnq3 Elmod1 Efnb2 Rasgef1b	See tissue distribution, auto-annotation
Neur501	501	Neuron	Cortical or hippocampal glutamatergic		358	Tbr1 Zfp703 Rasgrf1 Nrp2 Pex5l Rasgef1b	See tissue distribution, auto-annotation
Neur502	502	Neuron	Cortical or hippocampal glutamatergic		693	2600014E21Rik Fam84a Plxna4 Cdh4 Epha5 Plxna2	See tissue distribution, auto-annotation
Neur503	503	Neuron	Cortical or hippocampal glutamatergic		368	Sema3c Gm35835 Tbc1d23 Gramd1b Cux2 Osbpl6	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur504	504	Neuron	Cortical or hippocampal glutamatergic		1421	Unc5d Nos1 Dpy19l1 Gramd1b Nrp1 Cttnbp2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur505	505	Neuron	Cortical or hippocampal glutamatergic		1947	Satb2 Adamts2 Neurod2 Hs6st2 Dok6 Ppfia2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur506	506	Neuron	Cortical or hippocampal glutamatergic		519	Cck Slc4a4 Hcn1 Lmo7 Nrp1 Slc16a2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur507	507	Neuron	Cortical or hippocampal glutamatergic		573	Tiam2 A330084C13Rik Shb Gabra2 Nrp1 Chrna7	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur508	508	Neuron	Cortical or hippocampal glutamatergic		918	Tiam2 Abcc8 Sh3rf3 Cntn2 Fam49a Kcnn2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur509	509	Neuron	Cortical or hippocampal glutamatergic		1354	Tiam2 Abcc8 Cabp1 Cntn2 Fam49a Sox5	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur510	510	Neuron	Cortical or hippocampal glutamatergic		1240	Fezf2 Dact1 Neurod6 3110039M20Rik Cdh13 Sox5	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur511	511	Neuron	Cortical or hippocampal glutamatergic		1111	Sla Abcc8 Neurod6 Ndrg1 Fam49a Hivep2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur512	512	Neuron	Cortical or hippocampal glutamatergic		563	Inhba Met Mef2c Syt4 Dok5 Lrfn2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur513	513	Neuron	Cortical or hippocampal glutamatergic		638	Inhba Lpl Ccbe1 Arpp21 Glp2r Lrfn2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur514	514	Neuron	Cortical or hippocampal glutamatergic		1131	Mlip Ntf3 Ccbe1 Kcnq5 Dok5 Gipr	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur515	515	Neuron	Cortical or hippocampal glutamatergic		866	AC129186.1 Nr4a3 Mef2c Arpp21 Itpr1 Mical2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur516	516	Neuron	Cortical or hippocampal glutamatergic		2254	Satb2 Ttc9 Ube2ql1 Clstn2 Dok5 Dab1	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur517	517	Neuron	Cortical or hippocampal glutamatergic		1230	Satb2 Gm16599 Ccbe1 Clstn2 Jakmip1 Osbpl6	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur518	518	Neuron	Cortical or hippocampal glutamatergic		249	6530403H02Rik Chodl Sphkap Lingo2 Epha6 Gm12371	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur519	519	Neuron	Cortical or hippocampal glutamatergic		416	Fam19a1 Nrg3os Sphkap Sncb Dlg2 Grin2b	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur520	520	Neuron	Cortical or hippocampal glutamatergic		183	Crym Rprml Hcn1 Gabra2 Plppr4 Camk2b	See tissue distribution, auto-annotation
Neur521	521	Neuron	Cortical or hippocampal glutamatergic		113	Nts Plppr5 Nr4a2 Gm48091 Ryr3 B3gat1	See tissue distribution, auto-annotation
Neur522	522	Neuron	Cortical or hippocampal glutamatergic		104	Npy Shisa9 Gm30382 Tmtc1 Ldb2 Gipr	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur523	523	Neuron	Cortical or hippocampal glutamatergic		635	Sla Tcerg1l Mef2c Slc6a15 Oma1 B3galt2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur524	524	Neuron	Cortical or hippocampal glutamatergic		535	Gm28928 Pde1a Nfe2l3 Ppp1r1b Camkv Kcnab1	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur525	525	Neuron	Cortical or hippocampal glutamatergic		2046	Dync1i1 Mc4r Rgs6 Ppp1r1b St3gal1 Hivep2	See tissue distribution, auto-annotation
Neur526	526	Neuron	Cortical or hippocampal glutamatergic		302	Gm28928 Htr1f Nfe2l3 Ppp1r1b Ntsr1 Adcy1	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur527	527	Neuron	Cortical or hippocampal glutamatergic		45	Il1rapl2 Pde1a Nr4a2 Glra2 Bend6 Lypd6b	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur528	528	Neuron	Cortical or hippocampal glutamatergic		21	Adamts18 Nme2 Ppp1r14c Nin Syn2 Hivep2	See tissue distribution, auto-annotation; Expresses Satb2 based on upper layer auto-annotation
Neur529	529	Neuron	Forebrain GABAergic		11	Syt6 Timm23 Ptprm Bcl11b Grik3 Kcnd3	See auto-annotation, tissue distribution
Neur530	530	Neuron	Forebrain GABAergic		389	Gucy1a1 Drd2 Six3 Bcl11b Foxp1 Lrfn2	See auto-annotation, tissue distribution
Neur531	531	Neuron	Forebrain GABAergic		209	Gucy1a1 Zfp385b Slit3 Bcl11b Grik3 Lrfn2	See auto-annotation, tissue distribution
Neur532	532	Neuron	Forebrain GABAergic		373	B020031H02Rik Hs6st3 Six3 Bcl11b Carmil1 Enox1	See auto-annotation, tissue distribution
Neur533	533	Neuron	Forebrain GABAergic		451	B020031H02Rik Angpt1 Gad2 Zfp503 Mpped2 Meis2	See auto-annotation, tissue distribution
Neur534	534	Neuron	Forebrain GABAergic		164	B020031H02Rik Fam83d Six3 Mxd3 Aspm Sgo2a	See auto-annotation, tissue distribution
Neur535	535	Neuron	Forebrain GABAergic		274	Calb2 Sp8 Synpr Brinp1 Kirrel3 Fam124a	See auto-annotation, tissue distribution
Neur536	536	Neuron	Forebrain GABAergic		396	Dlx6os1 Gm38505 Brinp2 Shtn1 Grik3 Zfp704	See auto-annotation, tissue distribution
Neur537	537	Neuron	Forebrain GABAergic		360	Gm45680 Lypd1 Tshz1 Foxp2 Gm27032 Kcnd2	See auto-annotation, tissue distribution
Neur538	538	Neuron	Forebrain GABAergic		311	Dlx6os1 Peli2 Vstm2b Gm13889 Il1rapl1 Otud7a	See auto-annotation, tissue distribution
Neur539	539	Neuron	Forebrain GABAergic		203	Cpne4 Gpr26 Gng4 Ano4 Il1rapl1 Otud7a	See auto-annotation, tissue distribution
Neur540	540	Neuron	Forebrain GABAergic		278	Sp9 Nkx2-2 Dlx5 Dmrtb1 2510009E07Rik Tmem169	See auto-annotation, tissue distribution
Neur541	541	Neuron	Forebrain GABAergic		371	Dlx1as Skida1 Arx Prox1os Fign Tmem169	See auto-annotation, tissue distribution
Neur542	542	Neuron	Forebrain GABAergic		365	Dlx6os1 Fgd5 Dlx5 Nrxn3 Slco3a1 Klhdc8b	See auto-annotation, tissue distribution
Neur543	543	Neuron	Forebrain GABAergic		198	Dlx6os1 Sp8 G630016G05Rik Nrxn3 Grik3 Meis2	See auto-annotation, tissue distribution
Neur544	544	Neuron	Forebrain GABAergic		347	Lhx8 Shh Arx Nrxn3 Grik3 Elmo1	See auto-annotation, tissue distribution
Neur545	545	Neuron	Forebrain GABAergic		412	Lhx8 Gm14114 Gbx1 Gm17750 Gm45881 Dnm3	See auto-annotation, tissue distribution
Neur546	546	Neuron	Forebrain GABAergic		125	Lhx8 Tmem255a Dlx5 Egfem1 Grik3 Kcnh8	See auto-annotation, tissue distribution
Neur547	547	Neuron	Forebrain GABAergic		479	Isl1 Gm5532 Six3 Zdhhc2 Ubash3b Xpr1	See auto-annotation, tissue distribution
Neur548	548	Neuron	Forebrain GABAergic		236	Gm26883 Pou3f1 Gad2 Cacna2d3 Grik3 Enox1	See auto-annotation, tissue distribution
Neur549	549	Neuron	Forebrain GABAergic		878	Isl1 Dlx6 Ebf1 Vstm2a Rgs2 Med12l	See auto-annotation, tissue distribution
Neur550	550	Neuron	Forebrain GABAergic		344	Gucy1a1 Gpr88 Adora2a Gucy1b1 Gnal Gng7	See auto-annotation, tissue distribution; See MSN auto-annotation
Neur551	551	Neuron	Forebrain GABAergic		219	Rxrg Gm44593 Trpc7 Lingo2 Foxp1 Rasgef1b	See auto-annotation, tissue distribution; See MSN auto-annotation
Neur552	552	Neuron	Forebrain GABAergic		324	Cntnap3 Ikzf1 Cntn5 Lingo2 Ano3 Rasgef1b	See auto-annotation, tissue distribution; See MSN auto-annotation
Neur553	553	Neuron	Forebrain GABAergic		262	Rarb Rell2 Cntn5 Vstm2a Ano3 Med12l	See auto-annotation, tissue distribution; See MSN auto-annotation
Neur554	554	Neuron	Forebrain GABAergic		292	Isl1 Dchs2 Zfp804a Bcl11b Sox1 Atxn1	See auto-annotation, tissue distribution; See MSN auto-annotation
Neur555	555	Neuron	Forebrain GABAergic		249	Prok2 Cntnap5b Olfm3 Mgat4c Grm7 Lmo4	See auto-annotation, tissue distribution; See MSN auto-annotation
Neur556	556	Neuron	Undefined		17	Rxrg C79798 Caln1 B230334C09Rik Gm45881 Lrfn2	Doublets? High doublet score
Neur557	557	Neuron	Undefined		122	Mpped1 Mast1 Sh3rf3 Arpp21 Hivep3 Dlgap1	Doublets? High doublet score
Neur558	558	Neuron	Forebrain GABAergic		233	Dlx6os1 Prag1 Dlx5 Nrxn3 Zic1 Camk2a	See auto-annotation, tissue distribution
Neur559	559	Neuron	Forebrain GABAergic		542	Ecel1 Epha4 Dlx5 Nrxn3 Slco3a1 Syt1	See auto-annotation, tissue distribution
Neur560	560	Neuron	Forebrain GABAergic		381	Trpc4 Megf11 Dlx5 Zcchc12 Sntg1 Zdhhc14	See auto-annotation, tissue distribution
Neur561	561	Neuron	Forebrain GABAergic		318	Trhde 2900055J20Rik Kctd16 Prox1os Cntnap4 Csmd3	See auto-annotation, tissue distribution
Neur562	562	Neuron	Forebrain GABAergic		228	Calb1 Lgi1 St18 Erbb4 Olfm2 Pcdh17	See auto-annotation, tissue distribution
Neur563	563	Neuron	Forebrain GABAergic		63	Dlx1as Adamts17 Hs3st2 Frmpd3 Olfm2 Camk2a	See auto-annotation, tissue distribution
Neur564	564	Neuron	Forebrain GABAergic		91	Dlx1as Gm45323 C130073E24Rik Gm45341 Cntnap4 Slc6a1	See auto-annotation, tissue distribution; Expresses Lhx6
Neur565	565	Neuron	Forebrain GABAergic		622	Nxph2 Dgkg Gria1 Ptchd4 Gm45881 Dlgap1	See auto-annotation, tissue distribution; Expresses Lhx6
Neur566	566	Neuron	Forebrain GABAergic		338	Sst Fam135b Fam222a Sox6 Gm45881 Dlgap1	See auto-annotation, tissue distribution; Expresses Lhx6
Neur567	567	Neuron	Forebrain GABAergic		46	Npy Sntg2 Grin3a Nell1 Ptprt Klf5	See auto-annotation, tissue distribution
Neur568	568	Neuron	Forebrain GABAergic		1135	Dlx1as Neb Sh3rf3 Maf Cux2 Dlgap1	See auto-annotation, tissue distribution; Expresses Lhx6
Neur569	569	Neuron	Forebrain GABAergic		518	Dlx1as Pgm1 Cntnap5c Ackr3 Gria4 Dlgap1	See auto-annotation, tissue distribution; Expresses Lhx6
Neur570	570	Neuron	Forebrain GABAergic		464	Lhx6 Ostm1 Arx Erbb4 Rai2 Slc6a1	See auto-annotation, tissue distribution; Expresses Lhx6
Neur571	571	Neuron	Forebrain GABAergic		465	Lhx6 Smoc1 Sh3rf3 Sox6 Rai2 Dclk2	See auto-annotation, tissue distribution; Expresses Lhx6
Neur572	572	Neuron	Forebrain GABAergic		251	Dlx1as Prokr2 Hs3st2 Erbb4 Gria4 Slc6a1	See auto-annotation, tissue distribution; Expresses Lhx6
Neur573	573	Neuron	Forebrain GABAergic		367	Dlx6os1 Htr3a Plcl1 Nrxn3 Nol4 Pdzrn3	See auto-annotation, tissue distribution; Expresses Adarb2
Neur574	574	Neuron	Forebrain GABAergic		570	Adarb2 Htr3a Slain1 Erbb4 Bmper Pdzrn3	See auto-annotation, tissue distribution; Expresses Adarb2
Neur575	575	Neuron	Forebrain GABAergic		344	Npas1 Gm2516 Nr3c2 Cnr1 Ubash3b Npas3	See auto-annotation, tissue distribution; Expresses Adarb2
Neur576	576	Neuron	Midbrain GABAergic		125	Sst Nkd2 Sphkap Zfpm2 Dpf3 Ablim1	See auto-annotation, tissue distribution
Neur577	577	Neuron	Midbrain GABAergic		496	Sox14 Lypd1 Gm26688 Lmo1 Dscam Sorcs1	See auto-annotation, tissue distribution
Neur578	578	Neuron	Midbrain GABAergic		604	Sox14 Pde1b Scrt1 Sp5 Dscam Kctd1	See auto-annotation, tissue distribution
Neur579	579	Neuron	Midbrain GABAergic		514	Sox14 Wnt3 Otx2os1 Otx2 Dscam Mcc	See auto-annotation, tissue distribution
Neur580	580	Neuron	Midbrain GABAergic		189	Sox14 Adra1b Sphkap Slc35f4 Hdac9 Mcc	See auto-annotation, tissue distribution
Neur581	581	Neuron	Midbrain GABAergic		374	Col25a1 Tmem260 Tac1 Pdzd2 Trpm3 Mcc	See auto-annotation, tissue distribution
Neur582	582	Neuron	Midbrain GABAergic		83	Sox14 Adamts5 Rpp25 Ptchd4 Tmeff2 Sorcs1	See auto-annotation, tissue distribution
Neur583	583	Neuron	Midbrain GABAergic		140	Sst Igf1 Pnoc Maf Dscam Lrrc4c	See auto-annotation, tissue distribution
Neur584	584	Neuron	Midbrain GABAergic		277	Npy Lypd1 Pnoc Zfpm2 Dscam Ncald	See auto-annotation, tissue distribution
Neur585	585	Neuron	Midbrain GABAergic		399	Npy Inpp4b Pnoc Gria3 Kiz Ncald	See auto-annotation, tissue distribution
Neur586	586	Neuron	Midbrain GABAergic		363	Sox14 Fstl4 Pax7 Cdh22 Dscam Sorcs1	See auto-annotation, tissue distribution
Neur587	587	Neuron	Midbrain GABAergic		675	Tfap2b Emx2os Tmem132d Cdh22 Dscam Lrrn3	See auto-annotation, tissue distribution
Neur588	588	Neuron	Midbrain GABAergic		567	Fibcd1 Iqsec3 Otx2os1 Lmo1 Irx1 Tenm3	See auto-annotation, tissue distribution
Neur589	589	Neuron	Midbrain GABAergic		213	Fibcd1 Cxcl14 Otx2os1 Pdzd2 Fat4 Csmd3	See auto-annotation, tissue distribution
Neur590	590	Neuron	Hindbrain glycinergic		274	Tal1 Crb1 St18 Zfpm2 Irx5 Mapk10	See auto-annotation, tissue distribution
Neur591	591	Neuron	Midbrain-hindbrain GABAergic		439	Sox14 Pou6f2 Rpp25 Zfpm2 Vstm2l Gabrb2	See auto-annotation, tissue distribution; Expresses Pax5
Neur592	592	Neuron	Midbrain GABAergic	Midbrain ventral	364	Gata3 Glce Rpp25 Cacna2d3 Dscam Mapk10	See auto-annotation, tissue distribution
Neur593	593	Neuron	Midbrain GABAergic		488	Gata3 Gm14114 Lhx1os Ndst3 Rab3c Mapk10	See auto-annotation, tissue distribution
Neur594	594	Neuron	Midbrain GABAergic		310	Gm13256 Trbc2 Pnoc Dmrtb1 Vstm2l Ntm	See auto-annotation, tissue distribution
Neur595	595	Neuron	Midbrain GABAergic		351	Tal1 Pdik1l Rpp25 Gprin3 Dpf3 Oprl1	See auto-annotation, tissue distribution
Neur596	596	Neuron	Hindbrain glycinergic		405	Lamp5 Kifc3 Rpp25 Zfpm2 Satb1 Oprl1	See auto-annotation, tissue distribution
Neur597	597	Neuron	Hindbrain GABAergic		41	Pkd1l2 Pkd2l1 Gpd1 Gprin3 St6galnac5 Cystm1	See auto-annotation, tissue distribution
Neur598	598	Neuron	Hindbrain GABAergic		177	Pax2 2900055J20Rik Slc32a1 Glra2 Igfbp5 Lrp1b	See auto-annotation, tissue distribution
Neur599	599	Neuron	Hindbrain glycinergic		333	Pax2 Cdh23 Gm26688 Sgcd Igfbp5 Nptx1	See auto-annotation, tissue distribution
Neur600	600	Neuron	Hindbrain glycinergic		479	Pax2 Dusp14 Zfp804a Glra2 Prdm8 Sh3gl2	See auto-annotation, tissue distribution
Neur601	601	Neuron	Hindbrain glycinergic		341	Slc6a5 Arhgef11 Slc30a3 Crtac1 Rcan2 Dner	See auto-annotation, tissue distribution
Neur602	602	Neuron	Hindbrain glycinergic		279	Slc6a5 Adcy8 Unc5c Grin1 Dpf3 Lmo4	See auto-annotation, tissue distribution
Neur603	603	Neuron	Hindbrain glycinergic		343	Slc6a5 Gm28230 Hoxb4 Hoxb2 Hoxd3 Tmem169	See auto-annotation, tissue distribution
Neur604	604	Neuron	Hindbrain glycinergic		131	Lamp5 Gm44593 Hoxb4 Pld5 March4 Cygb	See auto-annotation, tissue distribution
Neur605	605	Neuron	Hindbrain glycinergic		329	Slc6a5 Gpr45 Hoxb4 Cbfa2t3 March4 Runx1t1	See auto-annotation, tissue distribution
Neur606	606	Neuron	Spinal cord glycinergic		304	Hoxb8 4930555F03Rik Hoxb5os Vgll3 Chmp2b Grik2	Expresses Hoxb8; See auto-annotation
Neur607	607	Neuron	Spinal cord glycinergic		73	Skor1 Smad3 Hoxb4 Vgll3 Galnt13 C230004F18Rik	Expresses Hoxb8; See auto-annotation
Neur608	608	Neuron	Hindbrain GABAergic		113	Rxfp3 Etv1 Unc13c Abhd3 Fstl5 Lrrc4c	See auto-annotation, tissue distribution
Neur609	609	Neuron	Hindbrain GABAergic		273	Skor1 Flrt2 Nxph4 Pld5 Syndig1l Chn2	See auto-annotation, tissue distribution
Neur610	610	Neuron	Hindbrain GABAergic		257	Skor2 En1 Gm26688 Ebf3 Fstl5 Gstm7	See auto-annotation, tissue distribution
Neur611	611	Neuron	Hindbrain GABAergic		253	Skor2 2700069I18Rik Gm26688 Vstm2a Esrrg Atp1a3	See auto-annotation, tissue distribution
Neur612	612	Neuron	Hindbrain glycinergic		373	Crhbp Nxph1 Mab21l2 Cacna2d3 Ica1 Ina	See auto-annotation, tissue distribution
Neur613	613	Neuron	Hindbrain glycinergic		441	Lamp5 Klhl5 Mab21l2 Cacna2d3 Hoxd3 Tmem169	See auto-annotation, tissue distribution
Neur614	614	Neuron	Hindbrain glycinergic		960	Lamp5 Rptor Mab21l2 Ablim3 Nova1 Csmd3	See auto-annotation, tissue distribution
Neur615	615	Neuron	Hindbrain GABAergic		118	Otp Fam131c Pax7 9530059O14Rik Esrrg Mast4	See auto-annotation, tissue distribution
Neur616	616	Neuron	Hindbrain GABAergic		304	Otp Flrt2 Lhx1os Mtus2 Epha6 Atp1a3	See auto-annotation, tissue distribution
Neur617	617	Neuron	Hindbrain glycinergic		374	Otp Gpc5 Lhx1os Lin7a Zfhx4 Mast4	See auto-annotation, tissue distribution
Neur618	618	Neuron	Hindbrain GABAergic		216	Otp Nkx1-2 Lhx1os Mtus2 Nrsn2 Rem2	See auto-annotation, tissue distribution
Neur619	619	Neuron	Hindbrain GABAergic		353	Hmx2 Prdm16 Gm26688 Mtus2 Lrba Ina	See auto-annotation, tissue distribution
Neur620	620	Neuron	Hindbrain glycinergic		142	Lamp5 Epha10 Sv2c Cacna2d3 Rcan2 Olfm1	See auto-annotation, tissue distribution
Neur621	621	Neuron	Hindbrain glycinergic		750	Pax8 Vps45 Hoxb3 Hoxb2 Plcb4 Tmem169	See auto-annotation, tissue distribution
Neur622	622	Neuron	Hindbrain glycinergic		125	Cartpt Irx4 Lhx1os Mtus2 Nebl Ina	See auto-annotation, tissue distribution
Neur623	623	Neuron	Spinal cord glutamatergic		291	Hoxb6 Dact1 Hoxb4 Lmx1b Tmeff2 Gstm7	Expresses Hoxb8; See auto-annotation
Neur624	624	Neuron	Spinal cord glutamatergic		142	Hoxb8 Slit1 Hoxb4 Skap1 Zic1 Snx11	Expresses Hoxb8; See auto-annotation
Neur625	625	Neuron	Hindbrain glutamatergic		55	Nrgn Gm32647 Gm2694 Lmx1b March11 Snx11	See auto-annotation, tissue distribution
Neur626	626	Neuron	Hindbrain glutamatergic		135	Mafb Cbln1 Bnc2 Maf Pex5l Arg2	See auto-annotation, tissue distribution
Neur627	627	Neuron	Hindbrain glutamatergic		85	Lbx1 Vwc2 Kcnip1 Grik1 March11 Phf24	See auto-annotation, tissue distribution
Neur628	628	Neuron	Hindbrain glutamatergic		234	Tlx3 Slc10a4 C130021I20Rik Lmx1b Ccdc184 Klhl29	See auto-annotation, tissue distribution
Neur629	629	Neuron	Hindbrain glutamatergic		211	4930469K13Rik Hoxc5 Hoxb4 Gm39244 March11 Ptpn5	See auto-annotation, tissue distribution
Neur630	630	Neuron	Hindbrain glutamatergic		182	Phox2b Galr1 Pcp4 Lmx1b Galnt13 Garnl3	See auto-annotation, tissue distribution
Neur631	631	Neuron	Hindbrain glutamatergic		151	Phox2b Cbln1 Gm2694 Lmx1b Slc17a6 Ina	See auto-annotation, tissue distribution
Neur632	632	Neuron	Hindbrain glutamatergic		187	Prrxl1 C1ql3 Mab21l2 Mgat4c Nrsn2 Meis1	See auto-annotation, tissue distribution
Neur633	633	Neuron	Hindbrain glutamatergic		454	Sncg Cyld Tshz3 Lin7a Nrsn2 Ina	See auto-annotation, tissue distribution
Neur634	634	Neuron	Hindbrain glutamatergic		392	Hoxb5 Tmem145 Tshz3 Tshz2 Ramp3 Atp1a3	See auto-annotation, tissue distribution
Neur635	635	Neuron	Hindbrain glutamatergic		278	Hoxb5 Galnt14 Hoxb4 Hoxb2 Ramp3 Meis1	See auto-annotation, tissue distribution
Neur636	636	Neuron	Hindbrain glutamatergic		50	Hmx2 Cbln1 Hoxb4 Lin7a Chsy3 Kcnn1	See auto-annotation, tissue distribution
Neur637	637	Neuron	Hindbrain glutamatergic		198	D130009I18Rik Hmx3 Kcnip1 Gm12688 Hoxd3 Kcnh8	See auto-annotation, tissue distribution
Neur638	638	Neuron	Hindbrain glutamatergic		110	Lhx3 Nkx6-3 Onecut2 Ngfr Chrna4 Rem2	See auto-annotation, tissue distribution
Neur639	639	Neuron	Hindbrain glutamatergic		154	Lhx3 Hoxb3os Mab21l2 Hoxb2 Slc17a6 Olfm1	See auto-annotation, tissue distribution
Neur640	640	Neuron	Hindbrain glutamatergic		271	Lhx4 Gm27199 Lhx1os Mtus2 Cacna2d1 Ina	See auto-annotation, tissue distribution
Neur641	641	Neuron	Hindbrain glutamatergic		98	Nhlh2 Papolg Nefm Thsd7a Celf6 Ina	See auto-annotation, tissue distribution
Neur642	642	Neuron	Hindbrain glutamatergic		295	C1ql4 Myh7 Chst8 Npnt Epb41l4a Ina	See auto-annotation, tissue distribution
Neur643	643	Neuron	Hindbrain glutamatergic		112	C1ql4 Prkg1 Nr4a2 Npnt Galnt13 Atp1b1	See auto-annotation, tissue distribution
Neur644	644	Neuron	Hindbrain glutamatergic		45	Tcf24 C1ql3 Gm28526 Nog Lrrtm3 Csmd3	See auto-annotation, tissue distribution
Neur645	645	Neuron	Hindbrain glutamatergic		145	C1ql4 2900079G21Rik Evx2 3632451O06Rik Rab3b Abtb2	See auto-annotation, tissue distribution
Neur646	646	Neuron	Hindbrain glutamatergic		65	C1ql1 Hcrtr2 Prdm6 Ptpre Begain Rgs9	See auto-annotation, tissue distribution
Neur647	647	Neuron	Hypothalamus glutamatergic		50	Nkx2-1 Ass1 Nup62cl Tub Chchd10 B630019K06Rik	See auto-annotation
Neur648	648	Neuron	Hypothalamus glutamatergic		184	Fezf1 Nr0b1 Nup62cl AC118542.1 Chchd10 B630019K06Rik	See auto-annotation
Neur649	649	Neuron	Hypothalamus glutamatergic		383	Vgll2 Npas4 Nptx2 Gm44644 Tmem179 Pnmal2	See auto-annotation
Neur650	650	Neuron	Hindbrain serotoninergic		212	Fev Hmx3 Slc17a8 Cryba2 Gchfr Gch1	See auto-annotation
Neur651	651	Neuron	Hindbrain serotoninergic		241	Fev Slc6a4 Tph2 Cryba2 Gchfr Gch1	See auto-annotation
Neur652	652	Neuron	Midbrain dopaminergic		220	Th Slc6a3 Aldh1a1 Ddc Chrna6 Prr16	See auto-annotation
Neur653	653	Neuron	Midbrain dopaminergic		71	Pitx3 Ret 1700042O10Rik Ddc Snca Gch1	See auto-annotation
Neur654	654	Neuron	Midbrain glutamatergic	Ventral diencephalon	89	C1ql1 Magel2 Pmfbp1 Foxd2 9130410C08Rik Rem2	See auto-annotation
Neur655	655	Neuron	Midbrain glutamatergic		58	Cartpt Postn Nkx6-1 Syt4 Gm26668 Rtl4	See auto-annotation
Neur656	656	Neuron	Midbrain glutamatergic	Ventral midbrain, diencephalon	37	Cartpt Tmem150c Pmfbp1 Foxd2 9130410C08Rik Parvb	See auto-annotation
Neur657	657	Neuron	Midbrain glutamatergic	Ventral midbrain, diencephalon	126	Sim1 Gm49144 Klhdc8a Gfra1 Pou3f4 Parvb	See auto-annotation, tissue distribution
Neur658	658	Neuron	Midbrain glutamatergic		142	Sim1 Gjd2 Galnt9 Grin2a Cacna2d1 Nalcn	See auto-annotation, tissue distribution
Neur659	659	Neuron	Midbrain glutamatergic	Diencephalon p3 and otic vesicle	113	Pitx2 Sorcs2 Barhl2 Lmx1b Pou3f4 Lemd1	See auto-annotation, tissue distribution
Neur660	660	Neuron	Midbrain glutamatergic		290	Lmx1a Zfp2 Nr4a2 Gm21949 Chgb Elmo1	See auto-annotation, tissue distribution
Neur661	661	Neuron	Midbrain glutamatergic		26	Lhx1 Gabra4 Lhx1os Gabra2 Hdac9 Dcun1d4	See auto-annotation, tissue distribution
Neur662	662	Neuron	Midbrain glutamatergic		100	Barhl1 Unc5b Adcyap1 Pax6 Hdac9 Gabrg2	See auto-annotation, tissue distribution
Neur663	663	Neuron	Hypothalamus		414	Otp Cbln1 Chst8 Crtac1 Slc17a6 Klhl32	Expresses Otp; see auto-annotation, tissue distribution
Neur664	664	Neuron	Hypothalamus		179	Otp Tmem255a Galnt9 Kcnh1 Adam23 Arfgef3	Expresses Otp; see auto-annotation, tissue distribution
Neur665	665	Neuron	Forebrain glutamatergic		93	Rasgrp1 D930028M14Rik Onecut2 Aifm3 Zdbf2 Klhdc8b	See auto-annotation, tissue distribution
Neur666	666	Neuron	Cajal-Retzius		194	Samd3 Dnajb5 Fam189a1 Tmem200a Slc17a6 Fam155a	See auto-annotation, tissue distribution
Neur667	667	Neuron	Forebrain glutamatergic		208	Samd3 Kif26a Uncx Nrp2 Ncam2 Ccser1	See auto-annotation, tissue distribution
Neur668	668	Neuron	Forebrain glutamatergic		106	Fezf1 Mir124a-1hg Rspo3 Clvs1 Slc17a6 Dcc	See auto-annotation, tissue distribution
Neur669	669	Neuron	Forebrain glutamatergic		116	Fezf1 Kcnip3 Uncx Nrn1 Nr2f2 Svip	See auto-annotation, tissue distribution
Neur670	670	Neuron	Forebrain glutamatergic		541	Tbr1 Tcte2 Tmem163 Epha3 Slc17a6 Ccser1	See auto-annotation, tissue distribution
Neur671	671	Neuron	Forebrain glutamatergic		292	Tbr1 Pcdh10 Siah3 Ndst3 Pcdh9 Ccser1	See auto-annotation, tissue distribution
Neur672	672	Neuron	Forebrain glutamatergic		479	Tbr1 Gm16351 Nxph4 Dusp4 Sorbs2 Ccser1	See auto-annotation, tissue distribution
Neur673	673	Neuron	Forebrain glutamatergic		74	Samd3 Ndp Reln Cnr1 Pex5l Ccser1	See auto-annotation, tissue distribution
Neur674	674	Neuron	Cajal-Retzius		167	Trp73 Kcnc1 Reln Cacna2d2 Rcan2 Trp53inp1	See auto-annotation, tissue distribution
Neur675	675	Neuron	Cajal-Retzius		121	Trp73 Rap2b Cdkn1a Cacna2d2 Agbl4 Phlda3	See auto-annotation, tissue distribution
Neur676	676	Neuron	Cajal-Retzius		140	Ndnf Map1a Gdf5 Fibin Kcnip2 Ankrd35	See auto-annotation, tissue distribution
Neur677	677	Neuron	Cajal-Retzius		179	Ndnf Gpr149 Reln Cd274 P2rx5 Cacng5	See auto-annotation, tissue distribution
Neur678	678	Neuron	Cajal-Retzius		117	Ndnf Fam159b Reln Cd274 Kcnip2 Ripk4	See auto-annotation, tissue distribution
Neur679	679	Neuron	Cajal-Retzius		360	Trp73 Gm48003 Reln Cacna2d2 Gm30648 Slc2a13	See auto-annotation, tissue distribution
Neur680	680	Neuron	Forebrain glutamatergic		269	Cck Pappa2 Barhl2 Mab21l1 Pbx3 Meis1	See auto-annotation, tissue distribution
Neur681	681	Neuron	Forebrain glutamatergic		453	Gm13404 Tfap2c Barhl2 Vcan Sel1l3 Kcnh8	See auto-annotation, tissue distribution
Neur682	682	Neuron	Forebrain glutamatergic		125	Rasgrp1 Pde2a Tmem163 Tmem200a Sel1l3 Kcnh8	See auto-annotation, tissue distribution
Neur683	683	Neuron	Forebrain glutamatergic		95	Samd3 Fcho1 Cntn4 Foxp2 Pbx3 Cacna1e	See auto-annotation, tissue distribution
Neur684	684	Neuron	Forebrain glutamatergic		227	Samd3 Plpp4 Tenm1 Rftn1 Chl1 Ccser1	See auto-annotation, tissue distribution
Neur685	685	Neuron	Forebrain glutamatergic		91	Grm1 Gpr149 Tmem158 Kcnf1 Chl1 Lrfn2	See auto-annotation, tissue distribution
Neur686	686	Neuron	Cajal-Retzius		128	Trp73 Fst Reln 5330417C22Rik Ajap1 Pls1	See auto-annotation, tissue distribution
Neur687	687	Neuron	Cajal-Retzius		35	Calb2 Rflna Gabrg3 Grm2 Dsp Pls1	See auto-annotation, tissue distribution
Neur688	688	Neuron	Forebrain glutamatergic		67	Nts Cdhr1 Atp6ap1l Sncb Fgf9 Slc4a10	See auto-annotation, tissue distribution
Neur689	689	Neuron	Forebrain glutamatergic		205	Nts Cnih3 Tfap2e Sorcs3 Deptor Brca1	See auto-annotation, tissue distribution
Neur690	690	Neuron	Forebrain glutamatergic		116	Nts Gm28175 Tfap2e Sorcs3 Nebl Brca1	See auto-annotation, tissue distribution
Neur691	691	Neuron	Hypothalamus		14	Gnrh1 Gng8 Acbd7 Gfy Kiss1r S100z	See tissue distribution; expresses Gnrh; belongs to clade 691- 698
Neur692	692	Neuron	Hypothalamus		26	Ghrh Scgn Esr1 Pnlip Gpr179 Rnf138rt1	See tissue distribution; expresses Ghrh; belongs to clade 691- 698
Neur693	693	Neuron	Hypothalamus		94	Pomc Tbx3os1 Kcnk12 Zim1 Rnf128 Vat1l	See tissue distribution; expresses Pomc; belongs to clade 691- 698
Neur694	694	Neuron	Hypothalamus		250	Otp Calcr Cited1 Baiap3 Rrad Gck	See tissue distribution; expresses Otp; belongs to clade 691- 698
Neur695	695	Neuron	Hypothalamus		2067	Hmx2 Magel2 Hap1 Gm44644 Nap1l5 Efcab1	See tissue distribution; belongs to clade 691- 698
Neur696	696	Neuron	Hypothalamus		80	Dio3 Rit2 Resp18 Gpr176 Faim2 Efcab1	See tissue distribution; belongs to clade 691- 698
Neur697	697	Neuron	Hypothalamus		140	Six6 Npas4 Scg2 Rasgrf2 Pde7b Rasd1	See tissue distribution; belongs to clade 691- 698
Neur698	698	Neuron	Hypothalamus		119	Avp Gal Kcnip4 Kcnh1 Ptprn Myrip	See tissue distribution; belongs to clade 691- 698
Neur699	699	Neuron	Spinal cord glutamatergic		74	Prrxl1 Mafa Casz1 Lmx1b Ajap1 Cpne5	Expresses Hoxb8; See auto-annotation
Neur700	700	Neuron	Spinal cord glutamatergic		178	Hoxb8 Pde11a Necab1 Spock3 Ankfn1 Cpne5	Expresses Hoxb8; See auto-annotation
Neur701	701	Neuron	Spinal cord glutamatergic		139	Hoxb8 Prss12 Necab1 Spock3 Dpyd Nyap2	Expresses Hoxb8; See auto-annotation
Neur702	702	Neuron	Midbrain glutamatergic		269	Barhl1 Mgll Rorb Dpp10 Ak8 Car11	See auto-annotation, tissue distribution
Neur703	703	Neuron	Midbrain glutamatergic		942	Bhlhe23 Pou6f1 Lmo3 Mab21l1 Nova1 Nkain3	See auto-annotation, tissue distribution
Neur704	704	Neuron	Midbrain glutamatergic		306	C1ql2 Esrrb Rgs6 Sgcz Nova1 Ntm	See auto-annotation, tissue distribution
Neur705	705	Neuron	Midbrain glutamatergic		697	Pou4f2 Galnt14 Pou4f1 Mab21l1 Sybu Csmd3	See auto-annotation, tissue distribution
Neur706	706	Neuron	Midbrain glutamatergic		1932	Car10 Pou3f2 Chd5 Sgcz Nova1 Csmd3	See auto-annotation, tissue distribution
Neur707	707	Neuron	Midbrain glutamatergic		680	Tfap2b Gabra1 Lgals7 Syt4 Ptprt Car11	See auto-annotation, tissue distribution
Neur708	708	Neuron	Midbrain glutamatergic		386	Tfap2b Foxb1 Olfm3 Ntng2 Pcsk2 Socs2	See auto-annotation, tissue distribution
Neur709	709	Neuron	Midbrain glutamatergic		641	Sst Gm28905 Tac1 Gm20754 Ldb2 Gabrb2	See auto-annotation, tissue distribution
Neur710	710	Neuron	Midbrain glutamatergic		418	Ndst4 Cxcl14 Cntn4 Gm20754 Lrrtm4 Gabrb2	See auto-annotation, tissue distribution
Neur711	711	Neuron	Midbrain glutamatergic		1476	Ndst4 Rarres1 Cntn4 Negr1 Zfhx3 Gabrb2	See auto-annotation, tissue distribution
Neur712	712	Neuron	Midbrain glutamatergic		669	Tfap2d Spats2l Cntn4 Sorcs3 Lrrtm3 Gabrb2	See auto-annotation, tissue distribution
Neur713	713	Neuron	Midbrain glutamatergic		423	Wif1 Hs3st4 Tcf7l2 A330102I10Rik Ephb1 Runx1t1	See auto-annotation, tissue distribution
Neur714	714	Neuron	Midbrain glutamatergic		891	Ndst4 Cfap77 Pdzrn4 Id4 Irx1 St8sia1	See auto-annotation, tissue distribution
Neur715	715	Neuron	Forebrain glutamatergic		395	Syt13 Prokr2 Samd5 Chst1 Rnf220 Tmem132a	See auto-annotation, tissue distribution
Neur716	716	Neuron	Forebrain glutamatergic		463	Syt13 Lrp4 Gm9844 Chst1 Rnf220 Mast4	See auto-annotation, tissue distribution
Neur717	717	Neuron	Forebrain glutamatergic		149	Syt13 Cacng3 A230006K03Rik Gabrb1 Astn2 Cacna1e	See auto-annotation, tissue distribution
Neur718	718	Neuron	Forebrain glutamatergic		291	Calb2 Mylk Ntng1 Id4 St6galnac5 Ncald	See auto-annotation, tissue distribution
Neur719	719	Neuron	Forebrain glutamatergic		166	Calb2 Fgf15 Zic4 Chst1 Rab3b Ncald	See auto-annotation, tissue distribution
Neur720	720	Neuron	Forebrain glutamatergic		270	Fam19a1 Igfbp7 Cbln2 Adamts19 Ankfn1 Ncald	See auto-annotation, tissue distribution
Neur721	721	Neuron	Forebrain glutamatergic		402	Tesc Hdac11 Camk2n1 Adamts19 March1 Ncald	See auto-annotation, tissue distribution
Neur722	722	Neuron	Forebrain glutamatergic		347	Syt13 Grk3 Alk Cntn6 Nptxr Cacna1e	See auto-annotation, tissue distribution
Neur723	723	Neuron	Forebrain glutamatergic		637	Kitl Trbc2 Ntng1 Prox1os Nptxr Gm8773	See auto-annotation, tissue distribution
Neur724	724	Neuron	Forebrain glutamatergic		174	Vgf Klhl26 Ntng1 1500035N22Rik Cgref1 Rab40b	See auto-annotation, tissue distribution
Neur725	725	Neuron	Forebrain glutamatergic		190	Slc18a2 5033430I15Rik Ntng1 Grb14 Camk4 Adcy1	See auto-annotation, tissue distribution
Neur726	726	Neuron	Mixed region		12	Sncg Gm45846 Tmem151a Atp6v1g2 Nrsn2 Dmtn	See auto-annotation, tissue distribution
Neur727	727	Neuron	Mixed region glutamatergic		28	Nmb Ctxn2 Fxyd7 Tmem91 Faim2 Lin7b	See auto-annotation, tissue distribution
Neur728	728	Neuron	Mixed region and neurotransmitter		145	Sst Golga7b Fxyd7 Maf Hpca Lingo1	See auto-annotation, tissue distribution
Neur729	729	Neuron	Mixed region and neurotransmitter		108	Sst Ctxn2 Scg2 Sncb Ckmt1 Syngr3	See auto-annotation, tissue distribution
Neur730	730	Neuron	Mixed region and neurotransmitter		1093	Vsnl1 Kifc2 Fxyd7 Sncb Ckmt1 Lin7b	See auto-annotation, tissue distribution
Neur731	731	Neuron	Mixed region and neurotransmitter		1947	Snhg11 Slc12a5 Asic1 Sncb Ckmt1 Fabp3	See auto-annotation, tissue distribution
Neur732	732	Neuron	Mixed region glutamatergic		2268	B230209E15Rik Gm2516 Tac1 Sncb Faim2 Ablim2	See auto-annotation, tissue distribution
Neur733	733	Neuron	Mixed region glutamatergic		814	Pitx2 Ctxn2 Scg2 Zcchc12 1700001L19Rik Nexmif	See auto-annotation, tissue distribution
Neur734	734	Neuron	Mixed region glutamatergic		219	Calb2 Lrrc75b AW551984 Caly Pak6 Cyb561	See auto-annotation, tissue distribution
Neur735	735	Neuron	Mixed region GABAergic		1080	Gata3 Brinp3 Rpp25 Sgcz Dscam Csmd3	See auto-annotation, tissue distribution
Neur736	736	Neuron	Mixed region GABAergic		561	B230209E15Rik Asic4 A230006K03Rik Zfp804b Cgref1 Gm16083	See auto-annotation, tissue distribution
Neur737	737	Neuron	Mixed region GABAergic		2437	Snhg11 Gm15398 Ripor2 Nell1 Lrrtm4 Csmd3	See auto-annotation, tissue distribution
Neur738	738	Neuron	Mixed region GABAergic		965	B230209E15Rik 2610008E11Rik Gabrg3 Gm44644 Faim2 A730017C20Rik	See auto-annotation, tissue distribution
Neur739	739	Neuron	Mixed region GABAergic		892	Ecel1 Cdh18 Dlx5 Tmem130 Tmem179 Csmd3	See auto-annotation, tissue distribution
Neur740	740	Neuron	Mixed region GABAergic		752	AI593442 Gm42303 Kcnmb2 Zbtb7c Ubash3b Gabra3	See auto-annotation, tissue distribution
Neur741	741	Neuron	Forebrain glutamatergic		34	Pmch Cntnap5b Fam46a Dmrtb1 Lrrtm4 Wdpcp	See auto-annotation, tissue distribution
Neur742	742	Neuron	Forebrain glutamatergic		154	Nts Cdh23 Gm43824 Vwc2l Cntn3 Cntnap2	See auto-annotation, tissue distribution
Neur743	743	Neuron	Mixed region glutamatergic		104	Pitx2 Thsd7b Foxa1 Gm21949 Plcxd3 Susd4	See auto-annotation, tissue distribution
Neur744	744	Neuron	Forebrain glutamatergic		1032	B230323A14Rik Brinp3 Pcp4 Spock1 Cacna2d1 Ehbp1l1	See auto-annotation, tissue distribution
Neur745	745	Neuron	Forebrain glutamatergic		296	Nppa Myo5b Kctd16 Nrsn1 Grm7 Rnf138rt1	See auto-annotation, tissue distribution
Neur746	746	Neuron	Forebrain GABAergic		153	Lhx8 Kcnc2 Gbx1 Kctd8 Lrrtm4 Gabrb2	See auto-annotation, tissue distribution
Neur747	747	Neuron	Forebrain GABAergic		185	Lhx6 Avpr1a Gbx1 Vstm2a Gpr158 Lypd6b	See auto-annotation, tissue distribution
Neur748	748	Neuron	Forebrain GABAergic		29	Syt10 Lgr5 Unc13c Ryr2 Unc80 Eef1a2	See auto-annotation, tissue distribution
Neur749	749	Neuron	Mixed region GABAergic		63	Cbln4 Cxcl14 Opcml Slc35f4 Satb1 Kcnab1	See auto-annotation, tissue distribution
Neur750	750	Neuron	Mixed region glutamatergic		296	Chrm3 Clec16a Reln Ebf3 Dpf3 Kcnh7	See auto-annotation, tissue distribution
Neur751	751	Neuron	Forebrain glutamatergic		314	Pitx2 Gm45768 Pdzrn4 Gm21949 Chgb Prkcb	See auto-annotation, tissue distribution
Neur752	752	Neuron	Mixed region glutamatergic		12	Calb2 Scn1a Gm20642 Dmxl2 March11 Oprl1	See auto-annotation, tissue distribution
Neur753	753	Neuron	Forebrain glutamatergic		215	Samd3 Gm45846 Ap1s2 Tmem200a Pcdh15 Tceal6	See auto-annotation, tissue distribution
Neur754	754	Neuron	Forebrain glutamatergic		172	Samd3 Ak5 Fam189a1 Gm21949 Fgf12 Nrg3	See auto-annotation, tissue distribution
Neur755	755	Neuron	Hindbrain glycinergic		144	Hoxb5 Galr1 Neto1 Ebf3 Esrrg Emc9	See auto-annotation, tissue distribution
Neur756	756	Neuron	Hindbrain glycinergic		539	Hoxb5 Arhgap15 Hoxb4 Sncb Dusp26 Atp1b1	See auto-annotation, tissue distribution; might include some spinal cord
Neur757	757	Neuron	Spinal cord glycinergic		368	Serpinb1b Hoxb7 Grm5 Grm3 Ramp3 Adcy1	Expresses Hoxb8
Neur758	758	Neuron	Spinal cord glycinergic		205	Hoxb8 Shisa8 Hoxb5os Prkcq Kcnip2 Nyap2	Expresses Hoxb8
Neur759	759	Neuron	Hindbrain glutamatergic		266	Hoxc4 Optn Neto1 Sncb Rnf152 Mdga2	See auto-annotation, tissue distribution
Neur760	760	Neuron	Hindbrain glutamatergic		658	Cntnap5a L3mbtl4 Gabrg1 Slc5a7 Rnf152 Lmo4	See auto-annotation, tissue distribution
Neur761	761	Neuron	Hindbrain glutamatergic		214	Cntnap5a Nrde2 Irx2 Glis1 Dpf3 Lmo4	See auto-annotation, tissue distribution
Neur762	762	Neuron	Cerebellum GABAergic		111	Car8 Amigo2 Rgs4 Spock3 Ptchd1 Fam184b	Expresses Pcp2, Car8, Calb1: Purkinje markers (mousebrain.org)
Neur763	763	Neuron	Cerebellum GABAergic		213	Pcp2 Ptprr Arhgef33 Grik1 Rora Fam184b	Expresses Pcp2, Car8, Calb1: Purkinje markers (mousebrain.org)
Neur764	764	Neuron	Cerebellum GABAergic		130	Cdh9 9630028H03Rik Arhgef33 Cpne9 Grm7 Lrrc4c	Expresses Pcp2, Car8, Calb1: Purkinje markers (mousebrain.org)
Neur765	765	Neuron	Cerebellum GABAergic		253	Fgf3 Slc1a6 Arhgef33 Vstm2a Gm26793 Coch	Expresses Pcp2, Car8, Calb1: Purkinje markers (mousebrain.org)
Neur766	766	Neuron	Cerebellum GABAergic		243	Car8 BC030500 Tmem132d Lrrc3b Vstm2l Lrrc4c	Expresses Car8, Calb1, some Pcp2: Purkinje markers (mousebrain.org)
Neur767	767	Neuron	Posterior hindbrain glutamatergic		261	D130009I18Rik Gabra5 Pou4f1 Gm12688 Npy1r Gm8773	Expresses Hoxb4, Hoxb5, Hoxd3 and medulla neuron HBGLU1 markers
Neur768	768	Neuron	Motor neuron		103	Prph Gm14697 Gm2990 Slc5a7 Tspan17 Dkkl1	See CrMN auto-annotation
Neur769	769	Neuron	Motor neuron		198	Sncg Cep170b Gm2990 Chat Tspan17 Nyap2	See CrMN auto-annotation
Neur770	770	Neuron	Undefined		203	Sncg B3gat2 Onecut2 Arhgdig Tspan17 Cend1	No strong markers on heatmap
Neur771	771	Neuron	Dorsal midbrain glutamatergic		144	Sncg Zbtb8a Gm28526 Klhl1 Stk32c Vwa5b2	Expresses Tfap2b (http://developingmouse.brain-map.org/experiment/show/100057423), Lhx2 and Lhx9 (https://doi.org/10.1016/S0925-4773(98)00233-0)
Neur772	772	Neuron	Dorsal midbrain glutamatergic		47	Pou4f3 Gfra2 Lgals7 Penk Ache Fkbp1b	Expresses Tfap2b (http://developingmouse.brain-map.org/experiment/show/100057423) and Isl1; Also see @PMid auto-annotation
Neur773	773	Neuron	Sensory neuron		87	Prph Calca Ppp1r1c Plekhd1 Stac Rxfp2	See PSN auto-annotation
Neur774	774	Neuron	Sensory neuron		120	Prph Gfra3 Ppp1r1c Scn10a Scn7a Ntrk1	Nociceptor sensory (trigeminal or DRG) based on auto-annotation and Hmx1: https://doi.org/10.1186/1471-213X-9-27
Neur775	775	Neuron	Sensory neuron		81	Pvalb Pirt P2rx3 Uts2b Gm43376 Kazald1	See PSN auto-annotation
Neur776	776	Neuron	Cerebellum glutamatergic		72	Gm42397 Kcnj12 Osbp2 Necab3 Me1 Ppfia2	Same clade as 782
Neur777	777	Neuron	Cerebellum glutamatergic		250	Gm42397 Chrm2 Hcn1 Svep1 Cplx2 Ppfia2	Same clade as 782
Neur778	778	Neuron	Cerebellum glutamatergic		611	Cadps2 Fat2 Rasgef1c Ndst3 Pcsk5 Sorcs1	Same clade as 782
Neur779	779	Neuron	Cerebellum glutamatergic		829	Kcnj6 Gm15577 Ucma Tmem91 Ppm1h Palm2	Same clade as 782; see auto-annotation
Neur780	780	Neuron	Cerebellum glutamatergic		329	Galnt15 Trpc3 Medag Patj Hdac9 Rassf8	Same clade as 782; see auto-annotation
Neur781	781	Neuron	Cerebellum glutamatergic		234	Lmx1a Diras2 Tll1 Frmpd4 Ppm1h Ror1	Same clade as 782; see auto-annotation
Neur782	782	Neuron	Cerebellum glutamatergic		128	Calb2 Cbln1 Gm2694 Frmpd4 Cntnap4 Trpc5	Expresses Lmx1a and Eomes, suggesting unipolar brush cell
Neur783	783	Neuron	Epithalamus glutamatergic		59	Nwd2 Islr2 Gm28526 Kctd8 Pcsk2 Parvb	See habenula, epithalamus auto-annotation
Neur784	784	Neuron	Epithalamus glutamatergic		114	Nwd2 Fam196b Kcng4 Aifm3 Cntnap4 Slc2a13	See habenula, epithalamus auto-annotation
Neur785	785	Neuron	Epithalamus glutamatergic		118	Nwd2 Elfn1 Kcng4 Mcub Fam19a4 Gpr139	See habenula, epithalamus auto-annotation
Neur786	786	Neuron	Epithalamus glutamatergic		103	Nwd2 Akain1 Necab2 Kctd8 Rab27b Sytl2	See habenula, epithalamus auto-annotation
Neur787	787	Neuron	Epithalamus glutamatergic		145	Nwd2 Vwc2 Necab2 Mgat4c Kcnma1 Qpct	See habenula, epithalamus auto-annotation
Neur788	788	Neuron	Epithalamus glutamatergic		223	Gpr151 Htr5b Necab2 Kctd8 Kcnma1 Nek7	See habenula, epithalamus auto-annotation
Neur789	789	Neuron	Epithalamus glutamatergic		175	Nwd2 Gm5741 Necab2 Syt9 Kcnma1 Gabbr2	See habenula, epithalamus auto-annotation
Neur790	790	Neuron	Epithalamus glutamatergic		261	Nwd2 Nxph3 Pou4f1 Kctd8 Kcnma1 Tmem117	See habenula, epithalamus auto-annotation
Neur791	791	Neuron	Epithalamus glutamatergic		175	Tesc Cryzl1 Pou4f1 Vav3 Irx1 Pcca	See habenula, epithalamus auto-annotation
Neur792	792	Neuron	Diencephalon glutamatergic		293	Tesc Neurod4 Rspo3 Clybl Zic2 Pcca	See tissue distribution and auto-annotation
Neur793	793	Neuron	Diencephalon glutamatergic		143	Cartpt Cd1d1 Synpr Pax6 Rmst Cntn1	See tissue distribution and auto-annotation
Neur794	794	Neuron	Diencephalon glutamatergic		63	Calb2 Fras1 C130073E24Rik Zfp804b Rab3b Retreg1	See tssue distribution and auto-annotation
Neur795	795	Neuron	Diencephalon glutamatergic		57	Nts Bsx C130073E24Rik Klhl1 Zfp365 Retreg1	See tissue distribution and auto-annotation
Neur796	796	Neuron	Diencephalon glutamatergic		29	Col8a1 Tph1 Gnb3 Gm44196 Sag Crx	See tissue distribution and auto-annotation
Neur797	797	Neuron	Pituitary neuroendocrine		12	Cga Tshb Apoc3 Vegfd Tshr Hlf	Expresses Pitx1, Cga

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