This page contains additional data supporting our manuscript
Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
Amit Zeisel, Ana B. Muñoz Manchado, Peter Lönnerberg, Gioele La Manno, Simone Codeluppi, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz, Charlotte Rolny, Gonçalo Castelo-Branco, Jens Hjerling-Leffler and Sten Linnarsson
Published in Science (2015)
Looking for data on perivascular macrophages? Look here.
The expression heatmap showing genes and cells sorted and grouped into nine clusters using the BackSPIN algorithm.
Browse the genome to explore the aligned data by major cell class. Vertical scale is log(molecules/cell + 1) and tracks are colored as in Fig. 1. Pay attention to the vertical scale - you may need to adjust it to see anything.
Download raw data:
Cell images (very large PDF) in heatmap order.
Expression barplots (very large PDF) in heatmap order and in absolute units of molecules per cell. Each barplot corresponds to a single pixel row in the expression heatmap.
Raw data for mRNA, expressed repeats, mitochondrial genes and ERCC Spike-Ins. Tab-delimited text files with columns in heatmap order (for mRNA, column 2 indicates group assignment of genes in the level 1 BackSPIN analysis).