Companion web sites for published papers and preprints

These papers have companion web sites, usually with a gene browser and data in more convenient formats than what you can get at GEO.

  • Chromatin accessibility during human first-trimester neurodevelopment Mannens CCA, Hu L, Lönnerberg P, Schipper M, Reagor CC, Li X, He X, Barker RA, Sundström E, Posthuma D, Linnarsson S.

    Published in Nature(PDF)

    ★ Supporting data and visualizations.

  • Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH Borm LE, Mossi Albiach A, Mannens CCA, Janusauskas J, Özgün C, Fernández-García D, Hodge R, Castillo F, Hedin CRH, Villablanca EJ, Uhlén P, Lein ES, Codeluppi S, Linnarsson S.

    Published in Nat Biotechnol(PDF)

    ★ Supporting data and visualizations.

  • Molecular architecture of the developing mouse brain La Manno G, Siletti K, Furlan A, Gyllborg D, Vinsland E, Mossi Albiach A, Mattsson Langseth C, Khven I, Lederer AR, Dratva LM, Johnsson A, Nilsson M, Lönnerberg P, Linnarsson S.

    Published in Nature(PDF)

    ★ Supporting data and visualizations.

  • Spatial organization of the somatosensory cortex revealed by osmFISH Codeluppi S, Borm LE, Zeisel A, La Manno G, van Lunteren JA, Svensson CI, Linnarsson S.

    Published in Nat Methods(PDF)

    ★ Supporting data and visualizations.

  • Molecular Architecture of the Mouse Nervous System Zeisel A, Hochgerner H, Lönnerberg P, Johnsson A, Memic F, van der Zwan J, Häring M, Braun E, Borm LE, La Manno G, Codeluppi S, Furlan A, Lee K, Skene N, Harris KD, Hjerling-Leffler J, Arenas E, Ernfors P, Marklund U, Linnarsson S.

    Published in Cell(PDF)

    ★ Supporting data and visualizations.

  • RNA velocity of single cells La Manno G, Soldatov R, Zeisel A, Braun E, Hochgerner H, Petukhov V, Lidschreiber K, Kastriti ME, Lönnerberg P, Furlan A, Fan J, Borm LE, Liu Z, van Bruggen D, Guo J, He X, Barker R, Sundström E, Castelo-Branco G, Cramer P, Adameyko I, Linnarsson S, Kharchenko PV.

    Published in Nature(PDF)

    ★ Supporting data and visualizations.

  • Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types Häring M, Zeisel A, Hochgerner H, Rinwa P, Jakobsson JET, Lönnerberg P, La Manno G, Sharma N, Borgius L, Kiehn O, Lagerström MC, Linnarsson S, Ernfors P.

    Published in Nat Neurosci(PDF)

    ★ Supporting data and visualizations.

  • Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing Hochgerner H, Zeisel A, Lönnerberg P, Linnarsson S.

    Published in Nat Neurosci(PDF)

    ★ Supporting data and visualizations.

  • Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells La Manno G, Gyllborg D, Codeluppi S, Nishimura K, Salto C, Zeisel A, Borm LE, Stott SRW, Toledo EM, Villaescusa JC, Lönnerberg P, Ryge J, Barker RA, Arenas E, Linnarsson S.

    Published in Cell(PDF)

    ★ Supporting data and visualizations.

  • Single-Cell Transcriptomics Reveals that Differentiation and Spatial Signatures Shape Epidermal and Hair Follicle Heterogeneity Joost S, Zeisel A, Jacob T, Sun X, La Manno G, Lönnerberg P, Linnarsson S, Kasper M.

    Published in Cell Syst(PDF)

    ★ Supporting data and visualizations.

  • Visceral motor neuron diversity delineates a cellular basis for nipple- and pilo-erection muscle control Furlan A, La Manno G, Lübke M, Häring M, Abdo H, Hochgerner H, Kupari J, Usoskin D, Airaksinen MS, Oliver G, Linnarsson S, Ernfors P.

    Published in Nat Neurosci(PDF)

    ★ Supporting data and visualizations.

  • Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system Marques S, Zeisel A, Codeluppi S, van Bruggen D, Mendanha Falcão A, Xiao L, Li H, Häring M, Hochgerner H, Romanov RA, Gyllborg D, Muñoz Manchado A, La Manno G, Lönnerberg P, Floriddia EM, Rezayee F, Ernfors P, Arenas E, Hjerling-Leffler J, Harkany T, Richardson WD, Linnarsson S, Castelo-Branco G.

    Published in Science(PDF)

    ★ Supporting data and visualizations.

  • Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq Zeisel A, Muñoz-Manchado AB, Codeluppi S, Lönnerberg P, La Manno G, Juréus A, Marques S, Munguba H, He L, Betsholtz C, Rolny C, Castelo-Branco G, Hjerling-Leffler J, Linnarsson S.

    Published in Science(PDF)

    ★ Supporting data and visualizations.

  • Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing Usoskin D, Furlan A, Islam S, Abdo H, Lönnerberg P, Lou D, Hjerling-Leffler J, Haeggström J, Kharchenko O, Kharchenko PV, Linnarsson S, Ernfors P.

    Published in Nat Neurosci(PDF)

    ★ Supporting data and visualizations.

Raw sequence data

All raw data for our published work is available at GEO.