Additional data and tools for the paper:
Molecular architecture of the developing mouse brain

NOTE: The interactive UMAP "wheel" is for technical reasons not currently available. We are working on finding a solution to re-publish it. In the meantime you may download the zipped mousewheel html/js/png tree code (56 GB). Install by unzipping into the html directory of an apache/nginx web server. The entry point is "mouse_dev/wheel.html". Javascript has to be enabled for the wheel to work.

• Code: Analysis pipeline on GitHub
• Publication: Comprehensive cell atlas of the first-trimester developing human brain
• Download complete dataset (loom format), 31053 genes x 292495 cells: dev_all.loom
• Alternative in (anndata format), 31053 genes x 292495 cells: developing_mouse_nervous_system.h5ad
• Download clusters (loom format), 31053 genes x 798 clusters: dev_all.agg.loom
• Browse the atlas of fetal cell types and states.