Cell type atlas


High resolution

Major cluster and sub clusters

Below links contain images of the spatial distribution and description of the major clusters and their sub-clusters.

  1. Inhibitory neurons
    1.1 Inhibitory CP: Spatial, Description
    1.2 Inhibitory Crhbp: Spatial, Description
    1.3 Inhibitory Cnr1: Spatial, Description
    1.4 Inhibitory IC: Spatial, Description
    1.5 Inhibitory Kcnip2: Spatial, Description
    1.6 Inhibitory Pthlh: Spatial, Description
    1.7 Inhibitory Vip: Spatial, Description
  2. Excitatory neurons
    2.1 Pyramidal Cpne5: Spatial, Description
    2.2 Pyramidal Layer 2-3: Spatial, Description
    2.3 Pyramidal Layer 2-3 Layer 5: Spatial, Description
    2.4 Pyramidal Kcnip2: Spatial, Description
    2.5 Pyramidal Layer 3-4: Pyramidal Layer 3-4, Description
    2.6 Pyramidal Layer 4: Spatial, Description
    2.7 Pyramidal Layer 5: Spatial, Description
    2.8 Pyramidal Layer 6: Spatial, Description
    2.9 Hippocampal neurons: Spatial, Description
  3. Astrocytes
    3.1 Astrocytes Gfap: Spatial, Description
    3.2 Astrocytes Mfge8: Spatial, Description
  4. Oligodendrocytes
    4.1 Oligodendrocyte Precusor Cells (OPC): Spatial, Description
    4.2 Comitted Oligodendrocyte Precusor Cells (COP): Spatial, Description
    4.3 Oligodendrocyte Newly Formed (NF): Spatial, Description
    4.4 Oligodendrocyte Myelin Forming (MF): Spatial , Description
    4.5 Oligodendrocyte Mature: Spatial, Description
  5. Brain immune
    5.1 Perivascular Macrophages: Spatial, Description
    5.2 Microglia: Spatial, Description
  6. Ventricle
    6.1 Choroid Plexus: Spatial, Description
    6.2 Ependymal: Spatial, Description
  7. Vasculature
    7.1 Pericytes: Spatial, Description
    7.2 Endothelial: Spatial, Description
    7.3 Endothelial 1: Spatial, Description
    7.4 Vascular Smooth Muscle: Spatial, Description