Configuration files¶

Description of the configurations files:

Experimental metadata¶

File description: Experimental metadata

Experimental_metadata.yaml

Filtering and raw counting¶

File description: Filtering and raw counting

Filtering_raw_counting.config.yaml

Staining segmentation¶

File description: Staining segmentation

Staining_segmentation.config.yaml

Coordinate file:¶

This file containes the coordinates of the tiles forming the large area images. The coords are exported from the raw nikon image files.

File description: Tile Coords