Dots coords correction¶
-
dots_coords_correction.
dots_coords_correction
()[source]¶ This script is used to collect all the raw countings from the different hybridization, correct the coords according to the registration of the reference gene and remove the dots that overlap in the overlapping regions between the images. Save the aggregate coords and also the coords after dots processing
Input via argparse
- path: string.
- Exact path to the experiment folder
- pxl: int
- Radius of pixel used to create the neighbourhood (nhood) used to define when two dots are the same