pysmFISH
  • Welcome to pysmFISH!
  • Installation
  • Cluster setup
  • API
  • Processing pipeline
    • Pipeline overview
    • Pipeline steps
    • Scripts
      • Add coords to Experimental_metadata.yaml config file
      • Process standalone experiment
      • Preprocessing
      • Reference channel registration
      • Apply stitching to osmFISH channels
      • Staining segmentation
      • Dots coords correction
    • Configuration files
  • License
  • Author and citations
  • Indices and Tables
pysmFISH
  • Docs »
  • Processing pipeline »
  • Scripts
  • View page source

ScriptsΒΆ

  • Add coords to Experimental_metadata.yaml config file
  • Process standalone experiment
  • Preprocessing
  • Reference channel registration
  • Apply stitching to osmFISH channels
  • Staining segmentation
  • Dots coords correction
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