pysmFISH
Welcome to pysmFISH!
Installation
Cluster setup
API
Processing pipeline
Pipeline overview
Pipeline steps
Scripts
Add coords to Experimental_metadata.yaml config file
Process standalone experiment
Preprocessing
Reference channel registration
Apply stitching to osmFISH channels
Staining segmentation
Dots coords correction
Configuration files
License
Author and citations
Indices and Tables
pysmFISH
Docs
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Processing pipeline
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Scripts
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Scripts
ΒΆ
Add coords to Experimental_metadata.yaml config file
Process standalone experiment
Preprocessing
Reference channel registration
Apply stitching to osmFISH channels
Staining segmentation
Dots coords correction