Loom
2.0
loompy.org
GitHub
Contents
Loompy documentation
Installation
Requirements
Easy installation
From source
Getting Started
Understanding the semantics of loom files
Connecting, not loading and saving
Reading and writing
Efficient indexing and compression
Matrix and attributes
Data types
API Walkthrough
Creating and connecting
Manipulate data
Cookbook
Working with a newly created file
Loading attributes from Pandas
Combining data using scan() and new()
Fitting an incremental PCA
Conventions
Single analysis per file
Orientation
Attribute naming conventions
Loom file format specs
Versions
Introduction
HDF5 concepts
Specification
Datatypes
Example
Complete API Reference
create (function)
new (function)
create_from_cellranger (function)
connect (function)
combine (function)
LoomConnection (class)
LayerManager (class)
MemoryLoomLayer (class)
LoomLayer (class)
ViewManager (class)
LoomView (class)
LoomValidator (class)
Loompy documentation
Installation
Understanding the semantics of loom files
API Walkthrough
Cookbook
Conventions
Loom file format specs
Complete API Reference
create (function)
new (function)
create_from_cellranger (function)
connect (function)
combine (function)
LoomConnection (class)
LayerManager (class)
MemoryLoomLayer (class)
LoomLayer (class)
ViewManager (class)
LoomView (class)
LoomValidator (class)
connect (function)
ΒΆ
Connect to a Loom file.
