Loom 3.0
  • loompy.org
  • GitHub
  • Contents
      • Loompy documentation
      • Installation
        • Requirements
        • Easy installation
        • From source
        • Getting Started
      • Understanding the semantics of loom files
        • Connecting, not loading and saving
        • Reading and writing
        • Efficient indexing and compression
        • Matrix and attributes
        • Data types
      • Create from fastq
        • The loompy command-line tool
        • Using the loompy fromfq command
      • API Walkthrough
        • Creating and connecting
        • Manipulate data
      • Cookbook
        • Working with a newly created file
        • Loading attributes from Pandas
        • Combining data using scan() and new()
        • Fitting an incremental PCA
      • Conventions
        • Single analysis per file
        • Orientation
        • Attribute naming conventions
      • Loom file format specs
        • Versions
        • Introduction
        • HDF5 concepts
        • Standards
        • Specification
        • Datatypes
        • Example
      • Complete API Reference
        • create (function)
        • new (function)
        • create_from_fastq (function)
        • create_from_cellranger (function)
        • connect (function)
        • combine (function)
        • LoomConnection (class)
        • LayerManager (class)
        • MemoryLoomLayer (class)
        • LoomLayer (class)
        • ViewManager (class)
        • LoomView (class)
        • LoomValidator (class)
  • Loompy documentation
  • Installation
  • Understanding the semantics of loom files
  • Create from fastq
  • API Walkthrough
  • Cookbook
  • Conventions
  • Loom file format specs
  • Complete API Reference
    • create (function)
    • new (function)
    • create_from_fastq (function)
    • create_from_cellranger (function)
    • connect (function)
    • combine (function)
    • LoomConnection (class)
    • LayerManager (class)
    • MemoryLoomLayer (class)
    • LoomLayer (class)
    • ViewManager (class)
    • LoomView (class)
    • LoomValidator (class)

Complete API ReferenceΒΆ

This is a complete API reference to loompy 3.0 generated using the docstrings of every loompy class/function.

  • create (function)
  • new (function)
  • create_from_fastq (function)
  • create_from_cellranger (function)
  • connect (function)
  • combine (function)
  • LoomConnection (class)
  • LayerManager (class)
  • MemoryLoomLayer (class)
  • LoomLayer (class)
  • ViewManager (class)
  • LoomView (class)
  • LoomValidator (class)

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