Add coords to Experimental_metadata.yaml config file

add_coords_to_experimental_metadata.add_coords_to_experimental_metadata()

Script used to add the coords to the Experimental_metadata.yaml file. In order to work:

• The Experimental_metadata.yaml file needs to have the processing hybridization

and the coords at point 0 initialized: ex:

TilesPositions: Hybridization1:

0:

• The coords file extracted from the Nikon microscope need to be in a text file

ex. Hyb1_Coords.txt. The Coords tag is necessary and Hyb is the hybridization_key

• The input parameters are passed via argparse

hybridization_number: string

Hybridization number (ex. 3) describing the hybridization to process.

path: string

Exact path to the folder containing the text file with the coordinates.

hybridization_key: string

Possible values ‘Hyb’ or ‘Strip’. To add coordinates for stripping if necessary.