Staining segmentation

staining_segmentation.staining_segmentation()

This script will segment the selected staining and output the identified objects.

All the parameters are entered via argparse.

scheduler: string

tcp address of the dask.distributed scheduler (ex. tcp://192.168.0.4:7003). default = False. If False the process will run on the local computer using nCPUs-1

path: string

Path to the processing directory

processing_file: string

Path to the hdf5 file with the staning to process

segmentation_staining: string

Staining to be segmented