Process standalone experiment

process_standalone_experiment.process_standalone_experiment()

Script to run conversion, filtering and raw counting on a small set of images. The analysis run locally

All the parameters are entered with argparse

path: string

Path to the experiment to process

analysis_name: string

Name of the analysis

stringency: int

Value of the stringency to use in the threshold selection. Default=0

min_distance: int

Min distance betwenn to peaks. Default=5

min_plane: int

Min plane for z-stack cropping. Default=None

max_plane: int:

Max plane for z-stack cropping. Default=None

ncores: int

Number of cores to use for the processing. Deafault=1