CNS neurons (taxon)
NeuronsCNS glia
CNS neurons
Cerebellum neurons
Cholinergic, monoaminergic and peptidergic neurons
Di- and mesencephalon neurons
Hindbrain neurons
Immature neural
Spinal cord neurons
Telencephalon interneurons
Telencephalon projecting neurons
Immune cells
Neural crest-like glia
PNS neurons
Vascular cells
Cell types
Cell types (clusters) assigned to the CNS neurons taxon.
| Name | Description |
| CBGRC | Granule neurons, cerebellum |
| CBINH1 | Molecular layer interneurons, cerebellum |
| CBINH2 | Granular layer interneurons, cerebellum |
| CBNBL1 | Neuroblasts, cerebellum |
| CBNBL2 | Neuroblasts, cerebellum |
| CBPC | Purkinje cells |
| CR | Cajal-Retzius cells, hippocampus |
| DECHO1 | Cholinergic neurons, septal nucleus, Meissnert and diagonal band |
| DECHO2 | Cholinergic neurons, habenula |
| DEGLU1 | Excitatory neurons, thalamus |
| DEGLU2 | Excitatory neurons, hypothalamus |
| DEGLU3 | Excitatory neurons, thalamus |
| DEGLU4 | Excitatory neurons, thalamus |
| DEGLU5 | Excitatory neurons, midbrain |
| DEINH1 | Inhibitory neurons, thalamus |
| DEINH2 | Inhibitory neurons, thalamus |
| DEINH3 | Inhibitory neurons, hypothalamus |
| DEINH4 | Inhibitory neurons, thalamus |
| DEINH5 | Peptidergic neurons, hypothalamus |
| DEINH6 | Peptidergic neurons, hypothalamus |
| DEINH7 | Inhibitory neurons, hypothalamus |
| DEINH8 | Inhibitory neurons, hypothalamus |
| DETPH | Neuroblast-like, habenula |
| DGGRC1 | Granule neuroblasts, dentate gyrus |
| DGGRC2 | Granule neurons, dentate gyrus |
| DGNBL1 | Granule neuroblasts, dentate gyrus |
| DGNBL2 | Granule neuroblasts, dentate gyrus |
| HBADR | Adrenergic cell groups of the medulla |
| HBCHO1 | Cholinergic neurons, hindbrain |
| HBCHO2 | Cholinergic neurons, hindbrain |
| HBCHO3 | Afferent nuclei of cranial nerves VI-XII |
| HBCHO4 | Afferent nuclei of cranial nerves III-V |
| HBGLU1 | Excitatory neurons, hindbrain |
| HBGLU10 | Excitatory neurons, hindbrain |
| HBGLU2 | Excitatory neurons, hindbrain |
| HBGLU3 | Excitatory neurons, hindbrain |
| HBGLU4 | Excitatory neurons, hindbrain |
| HBGLU5 | Excitatory neurons, hindbrain |
| HBGLU6 | Excitatory neurons, hindbrain |
| HBGLU7 | Excitatory neurons, hindbrain |
| HBGLU8 | Excitatory neurons, hindbrain |
| HBGLU9 | Excitatory neurons, hindbrain |
| HBINH1 | Inhibitory neurons, hindbrain |
| HBINH2 | Inhibitory neurons, hindbrain |
| HBINH3 | Inhibitory neurons, hindbrain |
| HBINH4 | Inhibitory neurons, hindbrain |
| HBINH5 | Inhibitory neurons, hindbrain |
| HBINH6 | Inhibitory neurons, hindbrain |
| HBINH7 | Inhibitory neurons, hindbrain |
| HBINH8 | Inhibitory neurons, hindbrain |
| HBINH9 | Inhibitory neurons, hindbrain |
| HBNOR | Noradrenergic neurons of the medulla |
| HBSER1 | Serotonergic neurons, hindbrain |
| HBSER2 | Serotonergic neurons, hindbrain |
| HBSER3 | Serotonergic neurons, hindbrain |
| HBSER4 | Serotonergic neurons, hindbrain |
| HBSER5 | Serotonergic neurons, hindbrain |
| HYPEP1 | Peptidergic neurons, hypothalamus |
| HYPEP2 | Peptidergic neurons, hypothalamus |
| HYPEP3 | Peptidergic neurons, hypothalamus |
| HYPEP4 | Oxytocin-producing cells, hypothalamus |
| HYPEP5 | Vasopressin-producing cells, hypothalamus |
| HYPEP6 | Orexin-producing neurons, hypothalamus |
| HYPEP7 | Pmch neurons, hypothalamus |
| HYPEP8 | Peptidergic neurons, hypothalamus |
| MBCHO1 | Cholinergic neurons, midbrain red nucleus |
| MBDOP1 | Dopaminergic neurons, periaqueductal grey |
| MBDOP2 | Dopaminergic neurons, ventral midbrain (SNc, VTA) |
| MEGLU1 | Excitatory neurons, midbrain |
| MEGLU10 | Excitatory neurons, midbrain |
| MEGLU11 | Excitatory neurons, midbrain |
| MEGLU14 | Glutamatergic projection neurons of the raphe nucleus |
| MEGLU2 | Excitatory neurons, midbrain |
| MEGLU3 | Excitatory neurons, midbrain |
| MEGLU4 | Excitatory neurons, midbrain |
| MEGLU5 | Excitatory neurons, midbrain |
| MEGLU6 | Excitatory neurons, midbrain |
| MEGLU7 | Excitatory neurons, midbrain |
| MEGLU8 | Excitatory neurons, midbrain |
| MEGLU9 | Excitatory neurons, midbrain |
| MEINH1 | Inhibitory neurons, midbrain |
| MEINH10 | Inhibitory neurons, midbrain |
| MEINH11 | Inhibitory neurons, midbrain |
| MEINH12 | Inhibitory neurons, midbrain |
| MEINH13 | Inhibitory neurons, midbrain |
| MEINH14 | Inhibitory neurons, midbrain |
| MEINH2 | Inhibitory neurons, midbrain |
| MEINH3 | Inhibitory neurons, midbrain |
| MEINH4 | Inhibitory neurons, midbrain |
| MEINH5 | Inhibitory neurons, midbrain |
| MEINH6 | Inhibitory neurons, midbrain |
| MEINH7 | Inhibitory neurons, midbrain |
| MEINH8 | Inhibitory neurons, midbrain |
| MEINH9 | Inhibitory neurons, midbrain |
| MSN1 | D1 medium spiny neurons, striatum |
| MSN2 | D2 medium spiny neurons, striatum |
| MSN3 | D2 medium spiny neurons, striatum |
| MSN4 | D1 medium spiny neurons, striatum |
| MSN5 | Patch D1/D2 neurons, striatum |
| MSN6 | Matrix D1 neurons, striatum |
| OBDOP | Dopaminergic periglomerular interneuron, olfactory bulb |
| OBINH1 | Inhibitory neurons, olfactory bulb |
| OBINH2 | Inner horizontal cell, olfactory bulb |
| OBINH3 | Inhibitory neurons, olfactory bulb |
| OBINH4 | Inhibitory neurons, olfactory bulb |
| OBINH5 | Inhibitory neurons, olfactory nulb |
| OBINH6 | External plexiform layer interneuron, olfactory bulb |
| OBNBL1 | Neuroblasts, olfactory |
| OBNBL2 | Neuroblasts, olfactory bulb |
| OBNBL3 | Neuroblasts, olfactory bulb |
| OBNBL4 | Inhibitory neurons, olfactory bulb |
| OBNBL5 | Inhibitory neurons, olfactory bulb |
| SCGLU1 | Excitatory neurons, spinal cord |
| SCGLU10 | Excitatory neurons, spinal cord |
| SCGLU2 | Excitatory neurons, spinal cord |
| SCGLU3 | Excitatory neurons, spinal cord |
| SCGLU4 | Excitatory neurons, spinal cord |
| SCGLU5 | Excitatory neurons, spinal cord |
| SCGLU6 | Excitatory neurons, spinal cord |
| SCGLU7 | Excitatory neurons, spinal cord |
| SCGLU8 | Excitatory neurons, spinal cord |
| SCGLU9 | Excitatory neurons, spinal cord |
| SCINH1 | Inhibitory neurons, spinal cord |
| SCINH10 | Inhibitory neurons, spinal cord |
| SCINH11 | Central canal neurons, spinal cord |
| SCINH2 | Inhibitory neurons, spinal cord |
| SCINH3 | Inhibitory neurons, spinal cord |
| SCINH4 | Inhibitory neurons, spinal cord |
| SCINH5 | Inhibitory neurons, spinal cord |
| SCINH6 | Inhibitory neurons, spinal cord |
| SCINH7 | Inhibitory neurons, spinal cord |
| SCINH8 | Inhibitory neurons, spinal cord |
| SCINH9 | Inhibitory neurons, spinal cord |
| SEPNBL | Neuroblasts, septum |
| SZNBL | Neuronal intermidate progenitor cells |
| TECHO | Cholinergic interneurons, telencephalon |
| TEGLU1 | Excitatory neurons, cerebral cortex |
| TEGLU10 | Excitatory neurons, cerebral cortex |
| TEGLU11 | Excitatory neurons, cerebral cortex |
| TEGLU12 | Excitatory neurons, cerebral cortex |
| TEGLU13 | Excitatory neurons, cerebral cortex |
| TEGLU14 | Excitatory neurons, cerebral cortex |
| TEGLU15 | Excitatory neurons, cerebral cortex |
| TEGLU16 | Excitatory neurons, cerebral cortex |
| TEGLU17 | Excitatory neurons, cerebral cortex |
| TEGLU18 | Excitatory neurons, cerebral cortex |
| TEGLU19 | Excitatory neurons, cerebral cortex |
| TEGLU2 | Excitatory neurons, cerebral cortex |
| TEGLU20 | Excitatory neurons, cerebral cortex |
| TEGLU21 | Excitatory neurons, hippocampus CA1 |
| TEGLU22 | Excitatory neurons, amygdala |
| TEGLU23 | Excitatory neurons, hippocampus CA3 |
| TEGLU24 | Excitatory neurons, hippocampus CA1 |
| TEGLU3 | Excitatory neurons, cerebral cortex |
| TEGLU4 | Excitatory neurons, cerebral cortex |
| TEGLU5 | Excitatory neurons, cerebral cortex |
| TEGLU6 | Excitatory neurons, cerebral cortex |
| TEGLU7 | Excitatory neurons, cerebral cortex |
| TEGLU8 | Excitatory neurons, cerebral cortex |
| TEGLU9 | Excitatory neurons, cerebral cortex |
| TEINH1 | Inhibitory neurons, pallidum |
| TEINH10 | R-LM border Cck interneurons, cortex/hippocampus |
| TEINH11 | R-LM border Cck interneurons, cortex/hippocampus |
| TEINH12 | Non-border Cck interneurons, cortex/hippocampus |
| TEINH13 | Trilaminar cells, hippocampus |
| TEINH14 | CGE-derived neurogliaform cells Cxcl14+, cortex/hippocampus |
| TEINH15 | CGE-derived neurogliaform cells, cortex/hippocampus |
| TEINH16 | Ivy and MGE-derived neurogliaform cells, cortex/hippocampus |
| TEINH17 | Axo-axonic, cortex/hippocampus |
| TEINH18 | Basket and bistratified cells, cortex/hippocampus |
| TEINH19 | Hippocamposeptal projection, cortex/hippocampus |
| TEINH2 | Inhibitory neurons, septal nucleus |
| TEINH20 | Inhibitory interneurons, hippocampus |
| TEINH21 | Sleep-active, long-range projection interneurons, cortex/hippocampus |
| TEINH3 | Inhibitory neurons, telencephalon |
| TEINH4 | Interneuron-selective interneurons, cortex/hippocampus |
| TEINH5 | Interneuron-selective interneurons, cortex/hippocampus |
| TEINH6 | Interneuron-selective interneurons, cortex/hippocampus |
| TEINH7 | Interneuron-selective interneurons, hippocampus |
| TEINH8 | Interneuron-selective interneurons, hippocampus |
| TEINH9 | Non-border Cck interneurons, hippocampus |
Heatmap and tSNE plot
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