add_coords_to_experimental_metadata
apply_stitching
dots_coords_correction
preprocessing_script
process_standalone_experiment
pysmFISH
pysmFISH.counting
pysmFISH.dots_calling
pysmFISH.dots_coords_calculations
pysmFISH.filtering
pysmFISH.hdf5_utils
pysmFISH.io
pysmFISH.object_based_segmentation
pysmFISH.stitching_package.GlobalOptimization
pysmFISH.stitching_package.hdf5preparation
pysmFISH.stitching_package.hybregistration
pysmFISH.stitching_package.inout
pysmFISH.stitching_package.MicroscopeData
pysmFISH.stitching_package.pairwisehelper
pysmFISH.stitching_package.pairwisesingle
pysmFISH.stitching_package.stitching
pysmFISH.stitching_package.tilejoining
pysmFISH.utils
reference_registration
staining_segmentation